Gene PC1_3042 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_3042 
Symbol 
ID8133997 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp3427372 
End bp3428031 
Gene Length660 bp 
Protein Length219 aa 
Translation table11 
GC content50% 
IMG OID644866325 
Producthypothetical protein 
Protein accessionYP_003018601 
Protein GI253689411 
COG category[R] General function prediction only 
COG ID[COG3683] ABC-type uncharacterized transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones4 
Plasmid unclonability p-value0.0486722 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTACATT ATAACGCTTT GAAACGCGGG TACGGACAGA TAACGTTGCT GATGACAGGC 
TTGGCATTCG GCCAACCCGT TTTCGCTCAC CCACACAGTT TTATTGATAT GCAGACGACA 
GTTGAGAGCC AGAACGACCA CATCACCGGT TTACGTATGC AGTGGACGAT GGATCCTATC 
ACATCGGCCG ATTTGCTGTA TGACGCAGGA AAGGCGAAAA CCGATTCTGA AATCTGGAAA 
AAGCTGGCGG CGGAAGTCAT GGCTAACGTG TGGGGGCAGC ACTATTTCAC CGATATTTAT 
CGTGATAATC AGCCCGTGAA ATATACGCTG TTGCCAACCG AGTATCATCT TTCCCGCAAA 
GGCAATCAGG CGGTCCTGGA ATTTGTACTG CCGTTGGCAC ATCCACAGCC GCTGGCCGGA 
AAGCCTTTAC TGATTTCGAC TTACGATCCT ACCTATTTTG TCGATATGTC TTATCAAAAT 
GATAAGGCTG TGAAGCTCGC GCCTGAGCTA GCCTCGCGCT GTAAAACGAC GCTCGTCACA 
CCAGAACCTA ACGCTGAACT GCAATCCTAT GCGCTATCGC TGGATAAGAA TGATGCGCCG 
GATGAAGATA TGGAGCTGGG GAAACAGTTC GCACAGCGGG TGACATTGCA ATGTCAGTGA
 
Protein sequence
MLHYNALKRG YGQITLLMTG LAFGQPVFAH PHSFIDMQTT VESQNDHITG LRMQWTMDPI 
TSADLLYDAG KAKTDSEIWK KLAAEVMANV WGQHYFTDIY RDNQPVKYTL LPTEYHLSRK 
GNQAVLEFVL PLAHPQPLAG KPLLISTYDP TYFVDMSYQN DKAVKLAPEL ASRCKTTLVT 
PEPNAELQSY ALSLDKNDAP DEDMELGKQF AQRVTLQCQ