| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2854 |
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| Symbol | |
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| ID | 8133808 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 3228052 |
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| End bp | 3228702 |
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| Gene Length | 651 bp |
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| Protein Length | 216 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644866142 |
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| Product | general secretion pathway protein J |
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| Protein accession | YP_003018419 |
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| Protein GI | 253689229 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4795] Type II secretory pathway, component PulJ |
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| TIGRFAM ID | [TIGR01711] general secretion pathway protein J
[TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.400784 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTAATA AAACAGGGAC GTGTAATCAA ACAAGAAGGG AGCGAGAGAT CGCACGGCAG
AAACGCCAAC AGGGGTTTAC TCTGCTGGAG ATGATTCTGG CGATTGCTAT CTTTGCCGCG
CTGAGCCTCA GCGCGTTTCA GGTGCTGAAT GGCGTGATGC GTAACGATGA AATTTCGCAG
CGCAAGGCCG AACGTCTGGC TGAAATACAG CGTGCCTTTT CACAAATGGA CAGCGATTTC
TCCCAGATGA TCGCACGTGG CAGCAGAGGA AGTACCTCGA TATTTTATGC TGGCCGCGAT
CAGTTAAAAA GCGATGACTG GGGCGTCAGC TTTATGCGTA ATGGCTGGCA GAACCCGTTT
GGCATATTGC CTCGCTCTGA ACTTCAGCCC GTAGCCTATC GGCTACGGGA ACACACTCTG
GAACGGTTAA CCCACACGGT GCCTGATCCG ATTGAGGGGC TCGATCCCGG TGTAAAACCG
CTTCTCACGC AGGTCGATGG CTTCCGCCTG CGCTTTTTCA GCAATAAAAC CTGGCGCGAT
CGCTGGGATA ACACGACGCA ATTGCCACAA GGGATCGAAG TGGTGTTGAC CTTAAGGGAT
TATGGCGAAA TGTCGCGTAT GTTTTTGATT ACCACCGGGC CGGCTAAATG A
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| Protein sequence | MFNKTGTCNQ TRREREIARQ KRQQGFTLLE MILAIAIFAA LSLSAFQVLN GVMRNDEISQ
RKAERLAEIQ RAFSQMDSDF SQMIARGSRG STSIFYAGRD QLKSDDWGVS FMRNGWQNPF
GILPRSELQP VAYRLREHTL ERLTHTVPDP IEGLDPGVKP LLTQVDGFRL RFFSNKTWRD
RWDNTTQLPQ GIEVVLTLRD YGEMSRMFLI TTGPAK
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