| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2794 |
|---|
| Symbol | |
|---|
| ID | 8133747 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 3167081 |
|---|
| End bp | 3167581 |
|---|
| Gene Length | 501 bp |
|---|
| Protein Length | 166 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644866082 |
|---|
| Product | colicin V production protein |
|---|
| Protein accession | YP_003018360 |
|---|
| Protein GI | 253689170 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1286] Uncharacterized membrane protein, required for colicin V production |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTTTGGG TTGATTACGT CATTATTGGC ATCATCGGTT TTTCGGCTCT GGTTAGCCTG
ATCCGGGGGT TTGTTCGTGA AGCGCTGTCG TTAGTAACCT GGGGATGTGC GTTTTTTGTC
GCCAGTCATT ACTACGCTTA CCTCGCGGTC TACTTCACCC GTTTTGATGA TGAGTTGGTG
CGTAACGGCA TTGCGATTGC CATTCTGTTT ATTGCAACGC TGATTGTGGG GGCTATCGTC
AACTATGCGA TTAGTTCGCT GGTTGAACGT ACCGGATTAT CCGGCACCGA TCGCGTTCTG
GGCATCTGTT TTGGTGCGCT ACGCGGGGTG CTGATCGTTT CCGCACTGCT ATTCTTTCTG
GATACTTTCA CCGGTTTTTC ACAAAGTGAT GACTGGAAGC AGTCCCAGTT AATCCCGCAG
TTCAGTTATA TTATCAGGTG GTTTTTTGAC TACCTGCAAA GCACGTCAAG TTTCTTGCCG
CAGCATTTAC CGCTGCGGTA G
|
|---|
| Protein sequence | MVWVDYVIIG IIGFSALVSL IRGFVREALS LVTWGCAFFV ASHYYAYLAV YFTRFDDELV
RNGIAIAILF IATLIVGAIV NYAISSLVER TGLSGTDRVL GICFGALRGV LIVSALLFFL
DTFTGFSQSD DWKQSQLIPQ FSYIIRWFFD YLQSTSSFLP QHLPLR
|
|---|
| |