Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2558 |
Symbol | |
ID | 8133505 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2925121 |
End bp | 2925759 |
Gene Length | 639 bp |
Protein Length | 212 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644865841 |
Product | hypothetical protein |
Protein accession | YP_003018125 |
Protein GI | 253688935 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG0698] Ribose 5-phosphate isomerase RpiB |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAATTG CACTGATTAA CGAGAACAGC CAGGCTGCCA AAAACGCCAT CATCGCCGAG TCTCTGACCA AAGCGGTTGC ACCGTTGGGC CACACTGTAC ACAACTACGG TCAATACGCC GTTGAAGATG CCGCACAGCT GACCTACATC CAGAACGGTA TTCTGGCTGC TATTCTGCTG AACTCTGGCG CTGCTGATTT CGTTGTGACT GGCTGCGGTA CTGGCCAAGG CGCCATGCTG GCTTGTAACT CTTTCCCAGG CGTAATCTGT GGTCTGGTTG TTGACCCATC TGATGCTTAC CTGTTCTCTC AGATCAACAA CGGTAACGCC GTGTCCGTTC CTTACGCTAA AGGCTTTGGC TGGGGCGCTG AACTGAACCT GGAAAACCTG TTTACCCAGC TGTTCAAAGA AGAAGGCGGC CGTGGCTATC CGAGCGATCG CGTTGTTCCT CAACAACGTA ACAAGAAAAT CCTGGATGCC GTAAAAGCAG TAACCTACAA CGACCTGATC ACCATTCTGA AAGGTCTCGA TCAGGATCTG GTTAAAGGCG CCGTTGCTGG TCCTAAATTC CAGGAATACT TCTTTGCTAA CAGCAAAGAC GAAGCACTGA CCAGCTACGT CAAAACGCTG CTGGCGTAA
|
Protein sequence | MKIALINENS QAAKNAIIAE SLTKAVAPLG HTVHNYGQYA VEDAAQLTYI QNGILAAILL NSGAADFVVT GCGTGQGAML ACNSFPGVIC GLVVDPSDAY LFSQINNGNA VSVPYAKGFG WGAELNLENL FTQLFKEEGG RGYPSDRVVP QQRNKKILDA VKAVTYNDLI TILKGLDQDL VKGAVAGPKF QEYFFANSKD EALTSYVKTL LA
|
| |