Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2215 |
Symbol | |
ID | 8133159 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2544311 |
End bp | 2545390 |
Gene Length | 1080 bp |
Protein Length | 359 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644865503 |
Product | type III secretion protein, YscU/HrpY family |
Protein accession | YP_003017790 |
Protein GI | 253688600 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1377] Flagellar biosynthesis pathway, component FlhB |
TIGRFAM ID | [TIGR01404] type III secretion protein, YscU/HrpY family |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCGAGA AAACGGAACA GCCCACAGAT AAAAAGCTGG AAGACGCACG CCGTAAAGGA GAAGTAGGAC AAAGTCAGGA TGTGCCCAAG CTGCTGATCT GCGTCGGTCT ACTGGAGTGC GTGTTGGCAT TAGCGGACAG CACAATGGGG AAACTCCAGA CGCTGGTGCA ACTGCCGCTA CAACGGCTGG ATGCGCCGTT TGCGCAGGTG GCGAAAGAAG TCTTTCATGA CGCCGCCGTG CTGGCAGGCA CACTCTGCCT GTTAGCCGCC GCGATTGCCG TCTTGCTGCG CATTGTGGGC GGCTGGATCC AATATGGCCC GCTGTTTGCG CCCGAAGCGC TGAAGCTCGA TCTCAATCGA CTGAACCCGA TTAACCAGTT TAAGCAGATG TTTTCGATGC GTAAGCTGGT GGAAATGCTG ACCAATATCC TGAAAGCCGT AGTGATCGGT ACGGTCTTTT ATAAAGTGGT GGTGCCGGAG TTGGAAGCGC TGGTCGAATT GGCCTACGGC GATCTCCACG GTTTCTGGCA AGGGGTTAAA GCGCTGCTGA CGCGCATTGC CCGCACCACG CTGACGGCGC TCTTAGTGCT ATCTGCACTG GATTTCGGTC TGCAAAAGTA TTTCTTTCTC AAGCAGCAGC GTATGAGCCA TGAGGATTTA CGCAACGAGC ACAAGGATTC CGAAGGCGAT CCCCACATGA AAGGCCATCG TAAGTCGCTG GCGCACGAAC TGATGAACGA ACCCGCCGCC CCGCGCCCCA AAGCCAAAGT CGAAGACGCC GATATGCTGC TGGTGAACCC AACGCACTAT GCGGTGGGAC TTTACTATCG TCCCGGCAAA ACGCCATTAC CGCGCATCTT GTTTAAAGGG GAAGATAGTG CGGCGCAGGA GCTCATCGCT CAGGCGAAAA AAGCAGACAT TCCGGTGATT CGCTTCATCT GGCTGACCCG TACGCTGTAT CGCACCACGC CGGAAGGCCA GTACATTCCG CGCGAAACGC TTCAGGCCGT AGCGCAGGTG TATCGCGTCC TGCGCCAGCT CGAAGACGAG CAAAAACGCG ATATTATCGA GATGGAGTGA
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Protein sequence | MSEKTEQPTD KKLEDARRKG EVGQSQDVPK LLICVGLLEC VLALADSTMG KLQTLVQLPL QRLDAPFAQV AKEVFHDAAV LAGTLCLLAA AIAVLLRIVG GWIQYGPLFA PEALKLDLNR LNPINQFKQM FSMRKLVEML TNILKAVVIG TVFYKVVVPE LEALVELAYG DLHGFWQGVK ALLTRIARTT LTALLVLSAL DFGLQKYFFL KQQRMSHEDL RNEHKDSEGD PHMKGHRKSL AHELMNEPAA PRPKAKVEDA DMLLVNPTHY AVGLYYRPGK TPLPRILFKG EDSAAQELIA QAKKADIPVI RFIWLTRTLY RTTPEGQYIP RETLQAVAQV YRVLRQLEDE QKRDIIEME
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