| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2211 |
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| Symbol | |
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| ID | 8133155 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2541413 |
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| End bp | 2542573 |
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| Gene Length | 1161 bp |
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| Protein Length | 386 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644865499 |
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| Product | type III secretion system apparatus protein YscQ/HrcQ |
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| Protein accession | YP_003017786 |
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| Protein GI | 253688596 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1886] Flagellar motor switch/type III secretory pathway protein |
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| TIGRFAM ID | [TIGR02551] type III secretion system apparatus protein YscQ/HrcQ |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.729158 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGTTCAA ATTCCCCACA CATTCGACCG CTGACACTGC CGACGCTGCG TGCGCAACAC
GCCCGCATCC GCTCGATGCT GGCCACCGGG CTAGTGCTGC CGTTTATCCG CGAGGGGTGC
GAGGGCCGAC TGCATCTTCA ACTGACGAAC GAATGCGTGC TGGCAGAGGA ATCGTTCTCT
GCACAACCAC ACGGTTGGCG TAGCGATATC GGCGATATCT CACTGACCGA TCCGTTCCCG
GTGCTCAGCC TGCTGTCGGA CTGCCCGCTG CTGCCGCTAT CTGAAGACGA TGATGCGGCA
CAGGAGTGGT ACTGGACGCT CTACAACCAG TCTCTCAATC CCGTCCTGCG CGCGCTCGTC
GGGGAGATTT ATCCGCTGGG TATGGGTCAT GAAACGCCGC ACGACAAGGG TGCCGCCCTC
AGCGCCTGGC TTTGTGTTAG CTGGAATGGC ATTACCGCAC GCAGCCGGAT GCAGGCCGCT
GACGCCGTCT GGCTGGCATT GTTTTCTCGC GCAGGCTGGC ACCGTCAGCG CCGTGCACTC
CCCGGAGGAA TGACGATCGC TCTGCCACTC ACACTGGCTG ATGCCGTAGT GCCGCTGCCC
GCGTTACACC ATTTGCGTAC GGGTGATCTC ATTCTGCCCA ACCGTCCGTG GTTTACCCCC
TCCGGCGAGG GAACGCTGTC ATCCGGCACG CTGCGCCTGC ACGGCACATT ACAGCTCACC
GCGCATGCAC CCTATACCTT TACCATTACC GACATGGAGA CTGTCTCAAT GCCCTCGTCT
GCTACCGATA CAATGTTCGC CGATCCCCAC TCAGAGGCAT CGGCATTTGA ATTCACGCAA
AAAAGTGACA ATGTCACCGA AAGCTTGCCA CCGCTGCCGG TTACCTTACA CCTTCGCTGC
GGTAGCCTGA CGATGACGCT AACGGAATTG CAGCACCTTG CCAGCGGTAG CGTGTTAACA
CTGCGCGACG TGGTGCCGGG ACAAGCCTGG CTGTATTACG GCGATATCGC TCTGGCGAGC
GGCGATCTGG TCGATGTGGA AGGCCGGCTG GGGCTACAGA TTACCCAGCG CTTTGCTGCA
CCGACACATT TTTCTGTACC AACACAAAGT CTGCCGACAG TGGATGAGGA TCGCGCCGTC
GAACCGGAGC TGGCACCATG A
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| Protein sequence | MSSNSPHIRP LTLPTLRAQH ARIRSMLATG LVLPFIREGC EGRLHLQLTN ECVLAEESFS
AQPHGWRSDI GDISLTDPFP VLSLLSDCPL LPLSEDDDAA QEWYWTLYNQ SLNPVLRALV
GEIYPLGMGH ETPHDKGAAL SAWLCVSWNG ITARSRMQAA DAVWLALFSR AGWHRQRRAL
PGGMTIALPL TLADAVVPLP ALHHLRTGDL ILPNRPWFTP SGEGTLSSGT LRLHGTLQLT
AHAPYTFTIT DMETVSMPSS ATDTMFADPH SEASAFEFTQ KSDNVTESLP PLPVTLHLRC
GSLTMTLTEL QHLASGSVLT LRDVVPGQAW LYYGDIALAS GDLVDVEGRL GLQITQRFAA
PTHFSVPTQS LPTVDEDRAV EPELAP
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