| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2017 |
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| Symbol | tppB |
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| ID | 8132961 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2315132 |
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| End bp | 2316652 |
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| Gene Length | 1521 bp |
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| Protein Length | 506 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644865307 |
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| Product | putative tripeptide transporter permease |
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| Protein accession | YP_003017594 |
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| Protein GI | 253688404 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG3104] Dipeptide/tripeptide permease |
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| TIGRFAM ID | [TIGR00924] amino acid/peptide transporter (Peptide:H+ symporter), bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.617443 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGTCAACAG CAAACAACAA CAGCGAATCT ACCGAAAGCG TCAGCATGAA CGCTTTCAAA
CAACCAAAAG CGTTTTATCT CATCTTTAGC ATTGAGCTGT GGGAGCGTTT TGGTTACTAC
GGCCTGCAAG GCATCATGGC CGTTTATCTG GTCAAAATGC TGGGTATGTC CGAAACCGAC
TCCATCACCC TTTTCTCCTC GTTCAGCGCG CTGGTATACG GTTTCGTCGC TATTGGCGGC
TGGCTGGGTG ACAAAGTCCT CGGCACCAAA CGTGTGATCG TGCTGGGTGC TATCGTGCTG
GCGATCGGTT ACACCATGAT TGCCTATTCA GGCCACAGCG TGGCGTGGGT TTATATCGGT
ATGGCAACCA TTGCCGTCGG TAACGGATTG TTTAAAGCCA ACCCGTCAGC CCTGCTGTCT
ACCTGCTATG CGAAGGACGA TCCACGTCTG GATGGCGCCT TCACTATGTA CTACATGGCG
GTGAACATTG GTTCCTTCTT CTCTATGCTG GCAACACCGG TGCTTGCAGC GAACTATGGC
TGGAGCGTTG CCTTCTCCCT GAGCGTAGTC GGTATGATTC TGACGCTGGT TAACTTCATG
TTCTGCCGTA AGTGGGTTAG CACACAAGGT TCTCAGCCAG ATTTCCAACC AATCAACCTG
AAAAAACTGG TCATTACCCT CGCGGGTATC GTTGTGCTGG TCGCGCTCTC CACCTGGTTG
CTGCACAATC AGGGCGTTGC CCGTTGGATT CTGACCATCA TTTCACTGGC CGTTGTCGCC
ATCTTCATCA AAGAAATGCT GGCGGTGAGC GGTGCTGAAC GCCGGAAAAT GATCGTTGCG
CTTCTGCTCA TGCTGGAGGC CGTGGTCTTC TTTGTGTTGT ACAACCAGAT GCCAACATCG
CTGAACTTCT TTGCGATTCG CAACGTTGAG CACTCTATTT TAGGTTTTGC CTTTGAGCCG
GAGCAGTATC AGGCACTCAA CCCATTCTGG ATCATGGTTG CCAGCCCGCT TCTGGCTGCG
GTTTACAACA AAATGGGCGA CCAACTGCCG ATGGCGCACA AGTTTGCGAT TGGTATGGTG
CTGTGCTCCG GCGCGTTCCT GGTACTGCCG TGGGGCGCCA GCATGGCAAA CGAACAGGGT
ATCGTGTCCG TTAACTGGCT GATCCTCTGC TATGGCCTGC AAAGTATCGG GGAATTAATG
ATTTCCGGTC TGGGGCTGGC GATGGTCGCT CAATTGGTGC CACAGCGCCT GATGGGCTTC
ATCATGGGTG CCTGGTTCCT GACATCAGCG GGTGCCGCCA TTATCGCAGG CTACGTCGCT
AACATGATGG CCGTGCCTGA GAACGTCGTA GACCCGCACG TATCCCTTGA GGTTTACAGC
AATGTCTTCA TGCAGATTGG TATCGTTACG GGCATCATCG CCGTTCTAAT GATGCTGACC
GCGCCAAAAC TGACGCGCAT GACGCAAGAT GTCGCTACCG ACGTTCCTGC GGACGCCGCC
ACTACGACAG CATCCGCCTG A
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| Protein sequence | MSTANNNSES TESVSMNAFK QPKAFYLIFS IELWERFGYY GLQGIMAVYL VKMLGMSETD
SITLFSSFSA LVYGFVAIGG WLGDKVLGTK RVIVLGAIVL AIGYTMIAYS GHSVAWVYIG
MATIAVGNGL FKANPSALLS TCYAKDDPRL DGAFTMYYMA VNIGSFFSML ATPVLAANYG
WSVAFSLSVV GMILTLVNFM FCRKWVSTQG SQPDFQPINL KKLVITLAGI VVLVALSTWL
LHNQGVARWI LTIISLAVVA IFIKEMLAVS GAERRKMIVA LLLMLEAVVF FVLYNQMPTS
LNFFAIRNVE HSILGFAFEP EQYQALNPFW IMVASPLLAA VYNKMGDQLP MAHKFAIGMV
LCSGAFLVLP WGASMANEQG IVSVNWLILC YGLQSIGELM ISGLGLAMVA QLVPQRLMGF
IMGAWFLTSA GAAIIAGYVA NMMAVPENVV DPHVSLEVYS NVFMQIGIVT GIIAVLMMLT
APKLTRMTQD VATDVPADAA TTTASA
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