Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2001 |
Symbol | |
ID | 8132945 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2296703 |
End bp | 2297431 |
Gene Length | 729 bp |
Protein Length | 242 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 644865291 |
Product | Oligogalacturonate-specific porin |
Protein accession | YP_003017578 |
Protein GI | 253688388 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCTA AAATATTGAC GATGATGGTA ACTTCTTTAA TCAGCTTAAG CTCCATGGCT GTTACGATTG ACTATCGTCA TGAAATGAAA GACACGGCAA AGAACGATCA TAAAGATCGC CTGCTGATGT CCCACCGTTT TGACAACGGC TTTGGTCTGT CCATGGAAGC CAAGTGGGGA CAATCTGACA GCGATAAGAC GCCAAATAAA CCGTTTAACG AGACGGTCAG CAACGGCACC GAAGTGACTG CCAGCTACCT GTACAAATTC GATAAAACCT TTGGTTTGGA AGCTGGTTTA AACATGGTTT CCAATTCTAG TAGCAACAAC TATCGTCCTT ATATTAAAGG CACGGCCAAT ATTACCGATT CACTGTATTA TGGCCTGCGC TATCGTGCAT CTTACCTCCG CGTGAGTGGT GATATTGGTA AGTCAAGTGT GACAAACCCT ACCGATATCA CTGGTTATAC TATTACCAGT ACGCTGGGTT ATAAACTGCC GGCCAACTTT GTGGTTGAAT ACGAATTCGA ATACAACAAA AACAACAAAG CAGGCGCTCC TTGGTATTTA GCGGATAGTG AAAATTATGA AATGAGCCAC GATATTAAAC TGGCTTACAA AGTCGACAAA AATTGGACAC CTTACGCTCA GATCGGGAAC GTAAAAGGCA GTACAGTCAC TGACGAGCGC CAAACTCGCT ACCGTGTTGG TGTACAATAC AGTTTCTAA
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Protein sequence | MKAKILTMMV TSLISLSSMA VTIDYRHEMK DTAKNDHKDR LLMSHRFDNG FGLSMEAKWG QSDSDKTPNK PFNETVSNGT EVTASYLYKF DKTFGLEAGL NMVSNSSSNN YRPYIKGTAN ITDSLYYGLR YRASYLRVSG DIGKSSVTNP TDITGYTITS TLGYKLPANF VVEYEFEYNK NNKAGAPWYL ADSENYEMSH DIKLAYKVDK NWTPYAQIGN VKGSTVTDER QTRYRVGVQY SF
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