| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1905 |
|---|
| Symbol | |
|---|
| ID | 8132848 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 2198645 |
|---|
| End bp | 2199772 |
|---|
| Gene Length | 1128 bp |
|---|
| Protein Length | 375 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 49% |
|---|
| IMG OID | 644865194 |
|---|
| Product | ABC transporter related |
|---|
| Protein accession | YP_003017482 |
|---|
| Protein GI | 253688292 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3839] ABC-type sugar transport systems, ATPase components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.303406 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTGAAG TTATTTTCAA TAAACTGGAA AAAGTATACT CCAACGGTTT CAAAGCCGTT
CACGGCATCG ACCTGACGAT TAAAGACGGC GAATTCATGG TTATCGTCGG CCCGTCTGGC
TGTGCGAAAT CCACCACGCT GCGCATGCTG GCAGGCCTGG AAACCATTAG CGGCGGTGAA
GTTCGCATCG GTGAGCGCGT TGTTAACAAT CTGGCGCCAA AAGAGCGTGG GATTGCGATG
GTGTTCCAGA ACTATGCCCT CTACCCTCAC ATGACGGTAA AAGAGAACCT GGCGTTTGGT
CTGAAGCTGA GCAAAATTCC TAAAGAGCAA ATCGAAGCGC AGGTAGCAGA AGCGGCCAAA
ATTCTGGAGC TGGAAGAACT GATGGATCGT CTGCCGCGCC AGCTGTCTGG TGGTCAGGCA
CAGCGTGTGG CCGTAGGCCG CGCCATCGTT AAAAAACCAG ATGTGTTCCT GTTTGACGAA
CCGTTGTCAA ACCTGGATGC CAAACTGCGT GCTTCCATGC GTATCCGTAT TTCCGACCTG
CATAAGCAAC TGAAGAAAAG CGGTAAAGCG GCGACAAGCG TATATGTTAC CCACGATCAG
ACTGAAGCAA TGACCATGGG TGACCGTATC TGCGTGATGA AACTCGGTCA CATCATGCAG
GTCGATACGC CGGATAACCT GTACCACTAC CCTGTCAACA TGTTCGTTGC TGGCTTCATT
GGCTCACCAG AAATGAACAT TAAACCGTGC AAACTGGTCG AGAAAGACGG TCAGGTTGGC
GTTGTTGTGG GTAATAACGC GCTGGTGTTG AGTGCTGAAA AACAAGATAA AGTGCGCAGC
TATATCGGAC AAGACGTATT CTTCGGTGTT CGCCCAGACT ATGTTTCCGT GTCAGATACG
CCATTTGAAG GCAGCCACTC ACAGGGTGAG CTGGTTCGCG TAGAAAACAT GGGTCACGAA
TTCTTTATGT ACATTAAAGT CGATGGCTTT GAATTAACCA GCCGCATTCC TTATGACGAA
GGTCGGCTGA TTATCGAGAA GGGACTGCAT CGTCCGGTAT ATTTCCAGTT CGACATGGAA
AAATGCCATA TTTTTGATGC AAAAACAGAA AAAAATATCT CTCTTTAA
|
|---|
| Protein sequence | MAEVIFNKLE KVYSNGFKAV HGIDLTIKDG EFMVIVGPSG CAKSTTLRML AGLETISGGE
VRIGERVVNN LAPKERGIAM VFQNYALYPH MTVKENLAFG LKLSKIPKEQ IEAQVAEAAK
ILELEELMDR LPRQLSGGQA QRVAVGRAIV KKPDVFLFDE PLSNLDAKLR ASMRIRISDL
HKQLKKSGKA ATSVYVTHDQ TEAMTMGDRI CVMKLGHIMQ VDTPDNLYHY PVNMFVAGFI
GSPEMNIKPC KLVEKDGQVG VVVGNNALVL SAEKQDKVRS YIGQDVFFGV RPDYVSVSDT
PFEGSHSQGE LVRVENMGHE FFMYIKVDGF ELTSRIPYDE GRLIIEKGLH RPVYFQFDME
KCHIFDAKTE KNISL
|
|---|
| |