Gene PC1_1643 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1643 
Symbol 
ID8132585 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1891594 
End bp1892619 
Gene Length1026 bp 
Protein Length341 aa 
Translation table11 
GC content54% 
IMG OID644864931 
Productbinding-protein-dependent transport systems inner membrane component 
Protein accessionYP_003017220 
Protein GI253688030 
COG category[R] General function prediction only 
COG ID[COG4239] ABC-type uncharacterized transport system, permease component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGCCGCT TAAGCCCGAT TAATCAGGCG CGCTGGGCGC GTTTTAAAAG TAATCGCCGC 
GGTTACTGGT CGCTGTGGAT TTTTATGGTG CTGTTTATCG TCAGCCTGTT TTCCGAGCTT 
ATCGCCAATG ATAAACCGCT GCTGGTGAAA TATGACGGCC AGTTCTATAC GCCAGCGCTC 
ATTGACCACA GCGAGAGGAC ATTCGGCGGG CAATTGGATA CCACCGCAGA CTTCCGCGAT 
CCCTATATCG CCGAACGTAT CAACAGCCAC GGCTGGGCTA TCTGGCCGCT GATTCACTAC 
AGCTATGACA CCATCAACTA CGCCACGACG GCTTCCTTCC CATCTGCACC AAACTGGCAG 
AACTGGCTGG GCACGGACAG TCAGGGGAAA GACGTGGTCG CACAGGTACT GTATGGCTTC 
CGTATATCAC TGCTGTTCGG TCTGGCGCTC ACGATCCTGT CCAGCGTGAT TGGTATCGCC 
GTCGGGGCGA CACAGGGCTA CTACGGCGGG CGTCTCGACC TCTGGGGTCA ACGCTTTATC 
GAAGTCTGGT CCGGGATGCC AACACTGTTT CTCATCATCC TGCTGTCCAG CGTGATTCAG 
CCGGATTTCT GGTGGCTATT AGGCATTACC GTCCTTTTCG GCTGGATGAG TCTGGTTGGC 
GTAGTACGGG CCGAATTTTT GCGTACCCGC AACTTTGACT ATATTCGCGC CGCGCAGGCG 
ATGGGCGTCA GCGATCGCGC GATTATGTTC CGTTGCATGT TGCCAAACGC GATGGTCGCT 
ACGCTGACTT ATCTGCCCTT CATTCTCTGC GGCTCGATTA CCACGCTGAC ATCGTTGGAC 
TTTCTTGGCT TTGGTCTACC GATGGGCTCG CCATCATTAG GTACCTTATT GCTGGAAGGG 
AAAAATAACC TTCAGGCACC GTGGCTCGGT ATTACCGTGT TTATGGTGCT TTCCATCGTG 
CTTTCCTTAC TCATCTTTAT CGGCGAAGCG GTGCGCGACG CCTTTGACCC TAGCAAGGCG 
CATTAA
 
Protein sequence
MSRLSPINQA RWARFKSNRR GYWSLWIFMV LFIVSLFSEL IANDKPLLVK YDGQFYTPAL 
IDHSERTFGG QLDTTADFRD PYIAERINSH GWAIWPLIHY SYDTINYATT ASFPSAPNWQ 
NWLGTDSQGK DVVAQVLYGF RISLLFGLAL TILSSVIGIA VGATQGYYGG RLDLWGQRFI 
EVWSGMPTLF LIILLSSVIQ PDFWWLLGIT VLFGWMSLVG VVRAEFLRTR NFDYIRAAQA 
MGVSDRAIMF RCMLPNAMVA TLTYLPFILC GSITTLTSLD FLGFGLPMGS PSLGTLLLEG 
KNNLQAPWLG ITVFMVLSIV LSLLIFIGEA VRDAFDPSKA H