| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1637 |
|---|
| Symbol | |
|---|
| ID | 8132579 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1885051 |
|---|
| End bp | 1886811 |
|---|
| Gene Length | 1761 bp |
|---|
| Protein Length | 586 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644864925 |
|---|
| Product | type III restriction protein res subunit |
|---|
| Protein accession | YP_003017214 |
|---|
| Protein GI | 253688024 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1061] DNA or RNA helicases of superfamily II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.726226 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCGTTCA CGCTACGGCC TTACCAACGT GAGGCTGTTT CCGCCACACT CGACTATTTT
CGCCGTCACA CCCAGCCGGC CGTCATTGTC TTGCCCACCG GCGCGGGGAA AAGTCTGGTT
ATCGCCGAAC TGGCGCGACT CGCACGCGGC CGCGTGCTGG TGCTCGCGCA CGTTAAGGAG
CTGGTCGCAC AAAACCACGC CAAATACTGC GCCTGGGGGC TTGATGCGGA TATCTTCGCC
GCCGGGCTGC GACAGCGAGA AAGTCAGGGA AAAGTGGTTT TTGGCAGCGT GCAATCTGTC
GCACGTAACC TCGACCAGTT CGATAATGCG TTCTCTCTGT TGATCATTGA TGAATGTCAC
CGTATTAGCG ACGACGATAA CAGCCAATAT CAACAAATCA TCCAGCACCT GCAAAAAAAC
AATCCACAGC TGCGGCTGCT CGGCTTAACC GCCACGCCTT ATCGGCTTGG CAAAGGCTGG
ATATATCAGT ATCACTATCA CGGCATGATA CGTGGCGACG AACGCTGTTT GTTCCGTGAT
TGTATCTATG AACTGCCGCT GCGCTATATG ATCAAACATG GCTTTCTGGT GCCGCCTGAC
AGACTGGATA TGCCCGTGGT GCAGTATGAT TTCAGCAAAC TCGCCGCCCG CAGCAACGGG
CTATTCAGTG AGGCTGATCT GAACCTCGAA CTCAAACGTC AGCAACGCAT TACGCCGCAC
ATCATCAGCC AGGTCGTCGA TTATGCGCAA ACGCGGCGCG GGGCGATGAT TTTTGCGTCC
ACCGTCGAAC ACGCCAAAGA AATTACGACC TTGTTACCGG CTGGCCAGGC GGCGTTGGTC
AGCGCCGATA CACCAGCAGC CGAGCGCGAT GCGCTGATTG ACGCCTTTAA ACAGCAGTCG
CTGAAATATC TGGTCAACGT GGCGGTGCTG ACAACGGGTT TTGATGCCCC ACATGTCGAT
CTTATCGCTA TCCTTCGCCC AACAGAATCC GTCAGCCTGT ACCAGCAAAT CGTCGGACGT
GGTTTACGCT TATATCCGGG AAAAACGGAC TGTCTGATTC TGGATTACGC GGGCAATCCA
CACGATCTCT ATACGCCAGA AGTCGGCAAC AGCAAGCCGC ATGCCGGTAG CCAACCGGTG
CAAATCTTCT GCCCCGTATG CGGCTTTGCC AACCTCTTTT GGGGGAAAAC CACTCCAGAC
GGCGACGTCA TCGAACACTA TGGTCGCCGC TGTCAGGGTT GGGAAATAGT GGAAAATGGC
CAACGCCAAC AGTGTGATTT CCGGTTTCGG TTTAAAGTCT GTCCGCACTG CGGCGCGGAG
AATGATATCG CAGCGCGCCG CTGCCACCAG TGTGATGAGG TGTTGGTCGA TCCCGACGAC
ATGCTGAAAG CAGCGCTTAA GCTGAAAGAT GCGCTGGTTT TACGCTGTAG CGGCATGAGC
TTCGAGCAAG GGCAGGATGC GAAAGGAGAA TGGCTGAAAA TCATCTATCA TGACGAGGAC
GGTACCGAAG TAAGCGAACG TTTTCGCCTG CACTCTACCG CGCAACGCCA TGTTTTCCTG
CAACAGTTTT TACGCGTTCA CCAACGCGCA CCGGGAACGC CGTTTAACTG GCAGCATGCC
GCCGACGTTA TCGCGCAGCA GGCCTTACTT CGCGCCCCAG ACTTTGTTGT CGCCCGCAAA
CACGGAAAAT TCTGGCAAAT CCGTGAAAAG CTCTTTGATT ATCAGGGACG ATTTCGTCGC
GCCAATGAGC TCCGCGGCTA A
|
|---|
| Protein sequence | MSFTLRPYQR EAVSATLDYF RRHTQPAVIV LPTGAGKSLV IAELARLARG RVLVLAHVKE
LVAQNHAKYC AWGLDADIFA AGLRQRESQG KVVFGSVQSV ARNLDQFDNA FSLLIIDECH
RISDDDNSQY QQIIQHLQKN NPQLRLLGLT ATPYRLGKGW IYQYHYHGMI RGDERCLFRD
CIYELPLRYM IKHGFLVPPD RLDMPVVQYD FSKLAARSNG LFSEADLNLE LKRQQRITPH
IISQVVDYAQ TRRGAMIFAS TVEHAKEITT LLPAGQAALV SADTPAAERD ALIDAFKQQS
LKYLVNVAVL TTGFDAPHVD LIAILRPTES VSLYQQIVGR GLRLYPGKTD CLILDYAGNP
HDLYTPEVGN SKPHAGSQPV QIFCPVCGFA NLFWGKTTPD GDVIEHYGRR CQGWEIVENG
QRQQCDFRFR FKVCPHCGAE NDIAARRCHQ CDEVLVDPDD MLKAALKLKD ALVLRCSGMS
FEQGQDAKGE WLKIIYHDED GTEVSERFRL HSTAQRHVFL QQFLRVHQRA PGTPFNWQHA
ADVIAQQALL RAPDFVVARK HGKFWQIREK LFDYQGRFRR ANELRG
|
|---|
| |