Gene PC1_1550 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1550 
Symbol 
ID8132491 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp1805696 
End bp1806373 
Gene Length678 bp 
Protein Length225 aa 
Translation table11 
GC content52% 
IMG OID644864839 
ProductLysine exporter protein (LYSE/YGGA) 
Protein accessionYP_003017129 
Protein GI253687939 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1280] Putative threonine efflux protein 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTTTATCA ATGCCACGTT TATCAACACA CCGTTCATCA ATACCCTTTT TTCTGCTGAC 
TCTCTCTTTC CTGCTCACTT TCCTGCTCTG GCGCTGGCGC ATTTTGTGGC GCTACTGAGC 
CCCGGCCCGG ATTTCTTCCT GCTGACGGCC TACGCCATTC GCTACCGACT GCGCGGCAGC 
GCGGGAATTT GTCTAGGCAT CGCGCTAGGT AACGGCATTT ATATTCTGCT GGCGGCGATC 
GGCTGGGCAG GCATTCAGCA TTCGCCCACG CTGTTTAGCC TCATAGAATT AGCCGGGGCA 
GCTTATCTGC TCTGGGTGGG CTATCAGTTA GTGAAGAGCC GTTCTGTGCT ATCGCTACAG 
GCAGAACAAC AGTCCGACCG CTGTCCAACA CTGCGTAAAC AAGTGCTGCT AGGACTCGGT 
TCGGCGCTAC TGAATCCCAA AAACATGCTG TTCTACATCA GTCTGATGAC CAGTATTCTT 
GGGCAAAATG TGACACCTAC GCAGCAATTC GTCAGCGGTA GTTGGATGTT TTCTGTCGTG 
TTGATGTGGG ATCTGCTGAT CGCTGCATTG ATCGCTCGCC CGCTGATTCA GCAGCGTTTA 
ACACGCTGGC TTAACCCGAT TGAACGCGGT GCTGGCGTCA TTCTGCTCTT TTTTGGTGTG 
CTGCTTTTAT TTCGCTAA
 
Protein sequence
MFINATFINT PFINTLFSAD SLFPAHFPAL ALAHFVALLS PGPDFFLLTA YAIRYRLRGS 
AGICLGIALG NGIYILLAAI GWAGIQHSPT LFSLIELAGA AYLLWVGYQL VKSRSVLSLQ 
AEQQSDRCPT LRKQVLLGLG SALLNPKNML FYISLMTSIL GQNVTPTQQF VSGSWMFSVV 
LMWDLLIAAL IARPLIQQRL TRWLNPIERG AGVILLFFGV LLLFR