Gene PC1_1376 details

Gene Information

• Locus tag: PC1_1376
• ID: 8132315
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 1603748
• End bp: 1605679
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644864666
• Product: ABC transporter related
• Protein accession: YP_003016958
• Protein GI: 253687768
• COG category: [V] Defense mechanisms
• COG ID: [COG1136] ABC-type antimicrobial peptide transport system, ATPase component

Plasmid Coverage information

• Num covering plasmid clones: 7
• Plasmid unclonability p-value: 0.726226
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGTAAATC CTCCCCCTTT AATCACGTTA TCCGGCGTTA GCAAGCAGTA TGGTCACGAG 
GCTCAGGGCT ACGTTAGCGT ATTACAGGAT ATCAATCTGA CTATCCATGC CGGTGAGTTT 
GTCGCTTTGG TTGGTCCTTC TGGATCGGGG AAGTCGACAC TCATGCATAT TCTGGGGGCT 
TTAGATCATG CGACTCAGGG GGTTTACCGC TTTGCCGGAC AGGATGTTTC CCAGTTAAGT 
GCCGACCAAT TATCACAACT TCGTCGTACG GTTTTTGGTT TTGTATTCCA ACGTTACTTC 
CTTATTCCTG GGATCAGTGC GCAGGAAAAT GTTGAACTTC CCACCGTCTA TGCTGGCCTG 
GAAAAAAGGT TGCGCCATGA CCATGCGCAG GCATTGTTAA GCCAGCTTTC GCTATCCGAT 
CGTTTTGACT ACAAACCGGA GCAACTTTCG GGGGGACAAC AGCAACGTGT ATCTATCGCC 
CGTGCCTTGA TAAACGGCGG CGATGTGTTG TTTGCCGATG AGCCGACGGG CGCGCTTGAT 
AGTGTTAACG GCGAGTCGGT ACTGGTGTTA TTGGAGACGC TGGCGGCCTC AGGAAGAACC 
GTTATTTTAG TCACACATAA CCCAGATGTG GCGAATCGCG CCCGCCGCGT GATCGAATTG 
CGTGATGGAC GCATTGTTTC TGATACCGTC CGTGCGGCCT CTGCCCCGGC AGAGACAATG 
AACACGCATT GGCTTGTAGC GGCGGGAGGG AAAACTGACC GCTATGCGTT ACTGCGTCAG 
GCTTGGCGGA CTCTGCTGTT TTCTCCATTG CGCAGTGCGC TGACATTGCT GGGGATTGCT 
ATCGGTATTG CCTCTATTCT CGTGATGCTT GGGATTGGGG AAGGCGCTCG GCAAGAAATG 
TCAAAAACCT TATCGCGGCT GGGCAGCACG CTAATGACCG TCATTCCGCA GAGCATTGAT 
GCTGATGTGG CGGCGGGGCG TATTACTGAT GCGGATATTG AAGCGCTTAA GCGGCTACCA 
GATATCGACG CGGTCGTTCC CATGCTGACC GGACAGGCTA CGGTGCGACA AGGCGCGTTT 
AATTTAAAAA GTGCCGTTAT TGCTACGACG GCCGAGGCGA TGGTGGTCAA TAACTGGGGG 
CTAGGCGCAG GGGCATTTAT TATGCCTTTG CACGAATACG CGAATATGTC CGTCACTGTG 
CTGGGTGCAG AGGTCGCGCA GCGCAGTTTT CCTTCTGGAA ACGCGGTAGG CAGCGACATT 
CTATTGAACA ATATTCCGTT CACGGTGGTA GGGGTTCTTG CTCCTCAAGG CGGGGCTGAT 
ATGAACGGGA ATCTTGATCA GGCTGTTATC GTGCCTTTTG GTACAGGAAG TTTGCGTGTC 
ATCGGACGGC AGAATATCGA CAGCGTGACA GTGAAGGCTC GTTCCTTACA AACAGTCAGA 
CGCGTGGAAA GCGAGGTGAA TGATCTACTG TCTGCACGTC ATCAGCGCTC TGATTTCACC 
ATCATCAACC GGGCGGCTAT TTTGCGCTCT CAGGAAGCGT CGATGGATAT CATGACGGCC 
ATGTTGGGTT CAATTGCCGC GATTTCATTG CTGGTGGGCG GAATTGGTGT GATGAACGTG 
ATGTTAATGT CTGTTGCAGA GCGTACGCGG GAGATTGGTA TTCGTCTGGC TGTCGGCGCC 
CGTCAGCAGG ATATCCAGTT CCAGTTTCTG TGGGAAGCCG TCATTCTGGC ATTGAGTGGT 
GGCGTGGTGG GGCTACTGGC GGGCTATTTT CTTGCTCACG TTGTTCACAC TTTCGGCAAG 
CCCGTCGCAC TGGGTTTTTT CCCTGCTTTG CTCTCTTTTT GTAGTGCAAT TGTCACCGGA 
CTCCTGTTTG GATATTTACC CGCACGTAAA GCGGCCCGGC TCGATCCCGT TATGGCGCTG 
AATCAGGAAT GA 

 

Protein sequence

MVNPPPLITL SGVSKQYGHE AQGYVSVLQD INLTIHAGEF VALVGPSGSG KSTLMHILGA 
LDHATQGVYR FAGQDVSQLS ADQLSQLRRT VFGFVFQRYF LIPGISAQEN VELPTVYAGL 
EKRLRHDHAQ ALLSQLSLSD RFDYKPEQLS GGQQQRVSIA RALINGGDVL FADEPTGALD 
SVNGESVLVL LETLAASGRT VILVTHNPDV ANRARRVIEL RDGRIVSDTV RAASAPAETM 
NTHWLVAAGG KTDRYALLRQ AWRTLLFSPL RSALTLLGIA IGIASILVML GIGEGARQEM 
SKTLSRLGST LMTVIPQSID ADVAAGRITD ADIEALKRLP DIDAVVPMLT GQATVRQGAF 
NLKSAVIATT AEAMVVNNWG LGAGAFIMPL HEYANMSVTV LGAEVAQRSF PSGNAVGSDI 
LLNNIPFTVV GVLAPQGGAD MNGNLDQAVI VPFGTGSLRV IGRQNIDSVT VKARSLQTVR 
RVESEVNDLL SARHQRSDFT IINRAAILRS QEASMDIMTA MLGSIAAISL LVGGIGVMNV 
MLMSVAERTR EIGIRLAVGA RQQDIQFQFL WEAVILALSG GVVGLLAGYF LAHVVHTFGK 
PVALGFFPAL LSFCSAIVTG LLFGYLPARK AARLDPVMAL NQE