| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1356 |
|---|
| Symbol | |
|---|
| ID | 8132294 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1580259 |
|---|
| End bp | 1581203 |
|---|
| Gene Length | 945 bp |
|---|
| Protein Length | 314 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644864646 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_003016939 |
|---|
| Protein GI | 253687749 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGATCGTT TCGATGCGAT GCGCGCCTTT GCTCGCGTGG TGGAGGCAGG TAGCTTCACA
AAGGCTGCCC AAACGCTGCA TATGAGCAAA ACCACGGTGA CGCAACTCAT TCAGCAGTTG
GAAGCGCGCC TGCGCGTCAA GTTGCTCCAT CGCACCACCC GCAAGCTCGG TGTGACTCCC
GATGGCGCGG TCTACTACGA ACGCGTCATC CGCCTGCTGG CAGACATGGA GGATGCTGAA
AACAGCCTGT CCAGTGCGGC GATTACGCCC AAGGGGCGGC TACGGGTGGA TGTGCCCAGT
CCGCTGGCCC GCCTTGTGCT CGTGCCAGCA CTACCGGCTT TCCACGCACG CTACCCTGAT
ATCCAGTTCG ACATGGGCGT GAGTGACCGG GTGGTGGATC TGATCGGCGA CAACGTGGAT
TGCGTCCTGC GCGGTGGCGA AATCAACGAC CAGTCCCTGA TCGCGCGCCA TGTCGGCGAT
TTGCAAATCG GCGTCTACGT CGCCCCCAGT TATGTGGAAC GCCTTGGCGT TCCTGCGCAT
CCGCGAGAGC TGGAAAACAC TGACCATCGC ATCGTGGGAT TCTTGTCCTC ACGCACCGGC
AAGATTGATT CTCTGGTACT GCACGGTGAG AGTGAACATA TTGAAATCAA GAGCAGCTAT
GTGCTTGCCG TGGATGATGG CAATGCTTAC CTCGAAGCTG GGCTAGCTGG GTTAGGCGTA
ATTGCGCTGC CAGTCTATAT GGCGGCAACA CATCAGGCTT GTGGAGCCTT GATTCCGCTA
TTTGAACAGT GGCGTATTAA TCCAATGCCC CTGCATCTGG CATTTCCGCC GAACCGCCAT
GTCAACGCCA AGCTGCGAGT TTTTATTGAT TGGATCGTTG AATTGATGCA GCAGCATGAG
ACAACGCTGC CTCCTGAAAA CAATACAGCT GCGTTGTCTC CGTAA
|
|---|
| Protein sequence | MDRFDAMRAF ARVVEAGSFT KAAQTLHMSK TTVTQLIQQL EARLRVKLLH RTTRKLGVTP
DGAVYYERVI RLLADMEDAE NSLSSAAITP KGRLRVDVPS PLARLVLVPA LPAFHARYPD
IQFDMGVSDR VVDLIGDNVD CVLRGGEIND QSLIARHVGD LQIGVYVAPS YVERLGVPAH
PRELENTDHR IVGFLSSRTG KIDSLVLHGE SEHIEIKSSY VLAVDDGNAY LEAGLAGLGV
IALPVYMAAT HQACGALIPL FEQWRINPMP LHLAFPPNRH VNAKLRVFID WIVELMQQHE
TTLPPENNTA ALSP
|
|---|
| |