| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1220 |
|---|
| Symbol | |
|---|
| ID | 8132155 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1425822 |
|---|
| End bp | 1427477 |
|---|
| Gene Length | 1656 bp |
|---|
| Protein Length | 551 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644864508 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003016804 |
|---|
| Protein GI | 253687614 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1178] ABC-type Fe3+ transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 3 |
|---|
| Plasmid unclonability p-value | 0.0321782 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACAAGT TTACTTTACT GCCACTGCTT ACGGTGGCGG TACTTTTTAC TCTGGTTGGC
ATTCCCGTAT TGTTCGTTGC GCTACAGGCA ATTTTCCCGA ATTTGGGTTC AGGTTCCTTT
GCGAACCCGT TCTCAGCCTT TGCAGATGTT TTTGCACAGG CGCGGCTATT CGCCCTATTG
AAAAATACGC TGCTGCTTGG GTTGGGTGTT GCCCTGTGCT GTGCTGTAAT CGCTATTCCA
CTCGGAGCAC TACGCGGACT CTTTGCACTG CCGTTGGCAA GATTTTGGGA TTTACTGTTT
CTCATCCCAT TCCTAATCCC ACCTTATATC GCCGGTCTGT CGTGGATGCT GGCGCTACAG
CCGCGAGGCT ACGCCGAGCA GCTATTGCCC ATTCAACTGG GAGAAGCGCT GTTTTCATTA
CCCGGCATGA TTGGCGTAAT GACGCTGAAT ATTTTCCCGG TCGTCTATTT CGCCGTTTCA
CGCAGTATGG CGGCGAGCGG AAATCGCCTG GCGGATGTCG CTCGCGTTCA CGGTGCCAGC
GGCTGGCAGG CATTTCTGCG AGTCACGCTG CCATTGTCAC TGCCTGCGAC AGCGGCCAGC
CTGCTACTTG CCTTTACGCT GGCGATCGAA GAGTACGGCA TTCCCGCTGC ACTCGGATCG
CGGGCCGGTA TTCAGGTGCT GACGACAAAT ATCGAGCAAC GACTGGCGGA CTGGCCGATC
GACCTCTCCG GTTCGGCGGT GCTGTCTTTG CTGCTGGTTG CTATTGCGCT CTGTGCATTT
ACCCTACAGC GGGCGATGGT CGCTGGGAGT AATGTCGAAA CAACCACAGG CAAACCCGCC
GCCATTGTCA CTCGTCCATT AGGCATATGG CGCTGGCCGG TATTAGTGCT GTTTAGCGTT
GTCGGCCTGC TGGCTGTGGG GATTCCACTG GCTTCCATGC TGATTACGGC GTTTTCTGCC
ACCATCTCCA GCACAATTTC CTGGCAAAAT TTAACCTGGC AGCACTTCAC CATGTTGGTT
GATTACGAAA ACGAAGCACT GCCAGCCTTA ACAACCAGTC TGGGTCTGGC GGTCGGCAGT
GCGTTACTGA CGGGAACGGT CGGCTTTCTC GCAGCCTGGT TTGTGGTTGC CAAGCGTATT
CGGGGGGCCG CCGTGCTGGA TGGATTATCG ATGCTTCCTG CCGCACTGCC GGGGATTGTT
GTCGGGGTGG GCTTGATTCT CGCCTGGAAC CAAAGTTTCT GGCCGGTCAC GCCCTATAAC
ACCTGGGTGA TTTTGCTGCT GTCATACAGT TGTCTGCTGC TGCCTTACCC CGTCCGCTAT
AGCAGCGCGG CATTAGCGCA AATCGGCAGT AATCTGGAAT CCGCGGCGCG CGTTCACGGC
GCTAACGCCA TGGCAGCATT GCGGTTAATC GTTTTCCCGC TGGTATTCCC CAGCCTACTG
GCTGCCATGA TGTTGGTCTT TGCTGTCGCA TCGCGCGAGC TGGTGACATC ACTCTTGCTC
TCGCCTGCCG GCGTGCAAAC GGTGTCCATT TTTGTTTGGC GTCAGTTTGA GCAAGGCTCC
GTCGGGGATG GTATGGCAAT GGCAAGCGTC GCGGTATTGA TCAGTCTATC GGTGATGTTG
CTGGCACTAC GATTTCATTC GCTCAAAACA AAATAA
|
|---|
| Protein sequence | MNKFTLLPLL TVAVLFTLVG IPVLFVALQA IFPNLGSGSF ANPFSAFADV FAQARLFALL
KNTLLLGLGV ALCCAVIAIP LGALRGLFAL PLARFWDLLF LIPFLIPPYI AGLSWMLALQ
PRGYAEQLLP IQLGEALFSL PGMIGVMTLN IFPVVYFAVS RSMAASGNRL ADVARVHGAS
GWQAFLRVTL PLSLPATAAS LLLAFTLAIE EYGIPAALGS RAGIQVLTTN IEQRLADWPI
DLSGSAVLSL LLVAIALCAF TLQRAMVAGS NVETTTGKPA AIVTRPLGIW RWPVLVLFSV
VGLLAVGIPL ASMLITAFSA TISSTISWQN LTWQHFTMLV DYENEALPAL TTSLGLAVGS
ALLTGTVGFL AAWFVVAKRI RGAAVLDGLS MLPAALPGIV VGVGLILAWN QSFWPVTPYN
TWVILLLSYS CLLLPYPVRY SSAALAQIGS NLESAARVHG ANAMAALRLI VFPLVFPSLL
AAMMLVFAVA SRELVTSLLL SPAGVQTVSI FVWRQFEQGS VGDGMAMASV AVLISLSVML
LALRFHSLKT K
|
|---|
| |