| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1004 |
|---|
| Symbol | rdgC |
|---|
| ID | 8131933 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1171377 |
|---|
| End bp | 1172306 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 51% |
|---|
| IMG OID | 644864287 |
|---|
| Product | recombination associated protein |
|---|
| Protein accession | YP_003016589 |
|---|
| Protein GI | 253687399 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG2974] DNA recombination-dependent growth factor C |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTTGTGGT TTAAAAACTT AATGATTTAC CGCCTAAGCC GGGATAGTGC ACTGTCTAAA
GATAACGTTT TATCTGCAGA TGAGCTGGAA AAACGGCTCA GCGCTTTCGC GTTCACCCCG
TGCGGCAGTC AGGATATGAT GAAAACGGGT TGGGTATCAC CGATGGGATC GCATAGCGAT
GCATTAACGC ATGTCGTTAA TGGGCAAATC GTTATCTGCG TCCGTAAAGA AGAAAAAATC
CTGCCTTCTC CGGTCATCAA GCAAACCCTT CAGGCCAAAA TCGAACGTCT GGAAGCGGAA
CAGCATCGCA AGCTGAAAAA AACCGAAAAA GATTCGCTGA AAGATGAAGT GCTGCATAGC
CTGCTGCCGC GTGCGTTCAG CCGTTTCAGT CAGGTCTGGA TGTGGATCGA CACGGTTAAC
GGCCTGATTA TGGTCGATGC CGCCAGTGCT AAAAAAGCGG AAGATACGCT GGCGCTGCTG
CGCAAAACGC TGGGGTCACT GCCTGTTGTG CCACTGACGA TGGAAAATCC TATTGAGCTG
ACGCTGACCG AGTGGGTACG CTCCGGTGAA CCGGCAGCAG GTTTTGTGCT ACAGGATGAA
GCAGAGCTAA AAGCGATTCT GGAAGACGGC GGCGTTATCC GCTGTAAAAA ACAGGATTTG
GTCTGCGATG AAATCGCCGT CCATATTGAA GCAGGCAAGC TGGTCACCAA GCTGGCGCTG
GACTGGCAGG AACGTATTCA GTTGGTCTTG TCCGAGGACG GTTCGGTAAA ACGCTTGAAG
TTCTCCGATA CGCTGCGGGA ACAAAACGAC GATATCGATC GGGAAGATTT TGCGCAGCGG
TTTGATGCCG ATTTCATTTT GATGACCAGT GAACTGGCTG CATTGATTGC GAATCTGATT
GAAGCGTTGG GCGGAGAAGC CCAACGTTAA
|
|---|
| Protein sequence | MLWFKNLMIY RLSRDSALSK DNVLSADELE KRLSAFAFTP CGSQDMMKTG WVSPMGSHSD
ALTHVVNGQI VICVRKEEKI LPSPVIKQTL QAKIERLEAE QHRKLKKTEK DSLKDEVLHS
LLPRAFSRFS QVWMWIDTVN GLIMVDAASA KKAEDTLALL RKTLGSLPVV PLTMENPIEL
TLTEWVRSGE PAAGFVLQDE AELKAILEDG GVIRCKKQDL VCDEIAVHIE AGKLVTKLAL
DWQERIQLVL SEDGSVKRLK FSDTLREQND DIDREDFAQR FDADFILMTS ELAALIANLI
EALGGEAQR
|
|---|
| |