| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0861 |
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| Symbol | |
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| ID | 8131786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1000970 |
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| End bp | 1004065 |
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| Gene Length | 3096 bp |
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| Protein Length | 1031 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 644864142 |
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| Product | type I site-specific deoxyribonuclease, HsdR family |
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| Protein accession | YP_003016448 |
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| Protein GI | 253687258 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family
[TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAGTACTG TCGGCCAGCG CGAACGCGCC ACACAGCAGC GTCTAATTCA GTTTTTCGTT
CAGGATTTAG AATACCGCTA TCTGAGCCGG AGCGCCGGGT ATGCCGGAGA CAGCAATATC
GACGCGGAAA TACTGAGCGC ATGGCTGAAA CGGCGCGGCG TCAGCGATAC CCTGATCACC
CGCGTACTTC GGCAACTGGA TTCCGCCGCC GCGCTGGGCG AAGGTAAGAA GCTGTATTAC
GCCAACAAAG AGGTCTACCG CCTGCTGCGT TACGGCGTGA AGGAAAAGGA AGGCGCGGGC
GAGCAGAATC AGACCGTGTG GCTGATCGAC TGGGCACATC CTGAAGCCAA TGATTTCGCC
ATCGCCGACG AGGTGACGGT AAAAGGCGAA TATCGCAAGC GTCCGGATCT GGTGCTGTAC
GTTAACGGTA TCGCGCTGGG CGTGATTGAG CTTAAACGTT CGTCAGTCAA CGTGAGTGAA
GGCATCCGGC AAAACCTCGA TAATCAAAAG AAAACCTTTA TCCGCAATTT CTTCACTACC
ATACAACTTG TGATGGCGGG CAACGATACG CAGGGGTTGC GCTACGGCAC GACTGAAACG
CCGGAAAAAT ATTATCTGGC GTGGAAGGAA GATAATCCCG ACACCGGTAC GCATAAGCTC
GACTTTCATT TGAGTCGCCT TTGCAGCAAA TCAAGGCTGC TGGATATTGT CCATAATTAC
ATTGCTTTTG ACGCCGGGGT GAAAAAACTG TGTCGCCATA ATCAGTTTTT CGGCGTCGAG
GCGGCTAAAC AGCATATTAC CCGTCGTGAA GGCGGGATTA TCTGGCACAC GCAGGGATCG
GGCAAAAGCC TGACGATGGT CTGGCTGGCG AAATGGATCC GCGAAAACAT GCCTAACTCC
CGTGTACTGA TTGTGACCGA TCGCACCGAA CTGGATGAGC AGATCGAAAG CGTATTTATG
GGAGTGGATG AAGACATTTA TCGCACTTCC AGCGGCAACG ATCTTATCGC GACGCTCAAT
CATCCTAACC CGTGGCTAAT CTGCTCGCTG GTGCATAAGT TCGGTCGTCG CAGTGAAGCA
GAAGACAGTG CGGCAACCGA CGCCTTTATC ACCGAGTTGC AGCAATCCCT GACGAAAACG
TTCCGCGCCA AAGGCGATCT GTTCGTCTTC GTGGATGAGT GCCACCGTAC ACAGTCCGGC
AAGTTACATA ACGCCATGAC TACCATTCTG CCGGAAGCCC TGTTTATCGG TTTTACCGGT
ACGCCGCTGA TGAAGAAAGA TAAGAAAAAG TCGGTAGAGG TTTTCGGCCC TTATATCCAT
ACCTATAAAT TTGATGAGGC GGTAGCCGAC GGCGTGGTGC TGGATCTGCG CTATGAGGCC
CGCGATATCG ATCAGTACCT GACGTCTGAG AAAAAGGTCG ATGACTGGTT TGAGGCCAAA
ACGCGCGGCC TGTCAAATTT AGCTAAAACT CAGCTTAAGC AGAAATGGGG CTCAATGCAG
AAGCTGCTTT CCAGCAAATC GCGGCTGGAA CAGATCGTCA ACGATATTCT GTTGGATATG
GACACTCGAC CGCGCCTGAT GGACGGGCGC GGCAATGCCA TGCTGGTTTG CAGCAGCGTG
TATCAGGCCT GTAAGGTTTA TGAGATGTTC AGCCAGACCG ATCTGGCTGG GAAAGTGGCG
ATTGTGACCA GCTTCCGACC CGATGCGGCC AGTATCAAAG GTGAAGAAAC CGGTGCGGGC
CTGACCGAGA AGCTATTTAA ATTCTCAACC TATCGCAAAA TGCTGGCCGA CTATTTTGAG
CAAAGCGAAG AGAAGATTGC CGGACGCATC GCCGAATTCG AACGGGAAGT TAAACAGCGC
TTTATTAATG AGCCGGGGCA AATGCGCCTG CTCATTGTGG TGGATAAGCT GCTGACCGGC
TTTGATGCCC CCTCTGCGAC TTATCTCTAT ATCGATAAAA CCATGACTGA CCATACACTA
TTTCAAGCGA TTTGCCGGGT AAACCGGCTG GACGGAGAAG ATAAAGAGTA TGGTTATATT
ATCGATTATA AAGATCTGTT CCGCTCACTG GATAAAGCGA TAACCGATTA CACCACAGGC
GCATTCGACG ATTATGATCA GGAAGATGTC GATGGCCTAC TGAAGAATCG TCTGGAACAG
GAGAAGCTGG ATCTCGACAG TGCACTGGAA GTAGTTCGTA GCCTGTGTGA ATCCGTCAGA
GCACCACGCA GTTTGCAGGA CTATCAGCAC TATTTCTGCG GCGAGTCGGG AGAAAATCAG
ACGGCATTAA GCGAGAAAGA GGCGCTGCGC CTGTCGTTCT ATCAGAATGT CGCCCGCCTG
CTACGTGCTT ACGCCAGTCT GGCAAATGAA ATGCCGGAAG CGGGTTATAC CATCGAAGAG
GCAGAAAGCA TCCGCGCCGA AGTCGCTGAA TTCGAGAAAC TACGTTACGA AATTAAACTG
ACCAGCGGCG ATCTGCTGGA TATGAAACGC TTTGAACCCG CCATGCGTCA CCTGCTGGAT
ATGTACGTTC GCGCCGACGG CAGCGAAGTG CTGATGGATT TCGAAGAGTT AAGCCTGATC
GAACTCATTG TTGAAAAAGG TGCGGCGGCA CTATCCGCCC TGCCGGATGA TATTCGCAAT
AATCAGGATG CAATGGCGGA AACCATCGAA AACAACGTAC GTAAAACTAT CGTAGATGAA
AATCCGGTTA ACCCGAAATA TTACGGACGC ATGTCGCTGT TGTTGGATGA ACTGATTACC
CTTCGCCGCC AGAATGCGCT TGATTATCAG CAGTATCTGG AGCGTATCCG TGATTTGTGT
AAACAAGTCA TTCGCCCGGA ACAAACCGCC GGAGCATCCT ACCCTGACTC AATGGACACA
CAGGCGAAAC GCGCGTTCTA TGATAACTTC GGCCATGATG AAGTGCTGGC AACCCGCATT
GATACGACGA TCCGCTATAC CAAAAAAGCG GAATGGATTG GCGATCGTTT TAAGGAACGA
GAAATCGCCT GCGCATTACG CGAAGAAACC GCCAGCTATG ACGTCAATAT TGAAGGTGTG
ATAGAGCTTG CCCGCAAGCA GAAGGAATAC CGCTGA
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| Protein sequence | MSTVGQRERA TQQRLIQFFV QDLEYRYLSR SAGYAGDSNI DAEILSAWLK RRGVSDTLIT
RVLRQLDSAA ALGEGKKLYY ANKEVYRLLR YGVKEKEGAG EQNQTVWLID WAHPEANDFA
IADEVTVKGE YRKRPDLVLY VNGIALGVIE LKRSSVNVSE GIRQNLDNQK KTFIRNFFTT
IQLVMAGNDT QGLRYGTTET PEKYYLAWKE DNPDTGTHKL DFHLSRLCSK SRLLDIVHNY
IAFDAGVKKL CRHNQFFGVE AAKQHITRRE GGIIWHTQGS GKSLTMVWLA KWIRENMPNS
RVLIVTDRTE LDEQIESVFM GVDEDIYRTS SGNDLIATLN HPNPWLICSL VHKFGRRSEA
EDSAATDAFI TELQQSLTKT FRAKGDLFVF VDECHRTQSG KLHNAMTTIL PEALFIGFTG
TPLMKKDKKK SVEVFGPYIH TYKFDEAVAD GVVLDLRYEA RDIDQYLTSE KKVDDWFEAK
TRGLSNLAKT QLKQKWGSMQ KLLSSKSRLE QIVNDILLDM DTRPRLMDGR GNAMLVCSSV
YQACKVYEMF SQTDLAGKVA IVTSFRPDAA SIKGEETGAG LTEKLFKFST YRKMLADYFE
QSEEKIAGRI AEFEREVKQR FINEPGQMRL LIVVDKLLTG FDAPSATYLY IDKTMTDHTL
FQAICRVNRL DGEDKEYGYI IDYKDLFRSL DKAITDYTTG AFDDYDQEDV DGLLKNRLEQ
EKLDLDSALE VVRSLCESVR APRSLQDYQH YFCGESGENQ TALSEKEALR LSFYQNVARL
LRAYASLANE MPEAGYTIEE AESIRAEVAE FEKLRYEIKL TSGDLLDMKR FEPAMRHLLD
MYVRADGSEV LMDFEELSLI ELIVEKGAAA LSALPDDIRN NQDAMAETIE NNVRKTIVDE
NPVNPKYYGR MSLLLDELIT LRRQNALDYQ QYLERIRDLC KQVIRPEQTA GASYPDSMDT
QAKRAFYDNF GHDEVLATRI DTTIRYTKKA EWIGDRFKER EIACALREET ASYDVNIEGV
IELARKQKEY R
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