| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0825 |
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| Symbol | |
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| ID | 8131750 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 963642 |
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| End bp | 966179 |
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| Gene Length | 2538 bp |
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| Protein Length | 845 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644864107 |
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| Product | fimbrial biogenesis outer membrane usher protein |
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| Protein accession | YP_003016413 |
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| Protein GI | 253687223 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3188] P pilus assembly protein, porin PapC |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGATATCT ACAACGCTGT ATCTGTTCAA GCACATATTC CTATGGCAAT GAAGAATCTT
ACGTTCAAAG AAAAAATAAA ATCAGCCTTA TTTCGCTACG GTTTTTTTAT TTTTTCTTTG
AATACAACAG CGCTCAGTGC AACGGAATTT AACGTTAACG TACTGGATGT CGATGAGCGT
AGTGACATTG ATCTTAGCCA TTTTTCCGAT CCTGAATACG TCACGCCCGG CACCTATCTT
TTATCAATAA AAGTGAATGC GCGTGAAATA CAGCAGGAGA TGATTAGCTA CCTGCCGGAA
GGCAACCATC AGGCTCGGCC AACGGCCTGC CTCTCGCCTG AACTCGTTGA TAAGCTGGCG
CTGAAGAAAG AAGCACGCGA CAAGGTCGAG CGATGGAATA ACGGCGAGTG TGTCGATCTG
ACGCCCATTG CTGGCGTGAA AGTGTCTAAC CAGATAGGTA TGGGAACGCT GAATATTACG
ATCCCTCAGG CCTGGCTGGC GTACAGCGAT AGCAACTGGA TTCCGCCCGA ACAGTGGGAT
CACGGTATCG GCGGGGCGCT GCTGGACTAT AACCTCGTGG GTAACGTACG TCGTGATACC
CATGGCAGAG GCACATCACA CTATCTCAGC AGCTACGGCA CTGCCGGGTT TAATCAGGGA
GCCTGGCGCT ACCGTGCCGA TTACCGCTAT TTTCTGCAAA AATCGCGCAA CGGAAATCGC
GATCGTTTCT CGTGGGATCA GTTTTACGCC TATCGCCCGC TGCCTACGCT TTCAGCCGAT
CTCAAACTGG GTGAAATGTA TTTCAGCAGC AACCTGTTCG ATAGCTATCG CTTTACCGGC
GTGTCATTAG CCAATAACGA CAACATGCTC CCACCTTCGT TGCGCGGCTA CGCCCCCGAA
ATTCGCGGCG TCGCTAAATC AAACGCTACG GTGACCGTCA CGCAAAATGG CCGACTGATC
TATGAAACCA CCGTGCCAGC TGGCCCCTTT GCGATTCAGG ATCTGAAGAA CGGCGTCAGC
GGCACGCTGG ATGTCCGCGT GACGGAAGAA GACGGCACGG TGACGACGTT CCAGACTGAA
TCGGCCAACC TGCCTTACCT GACGCGGCCG GGACACGTGC AGTATAAACT CGCTGCCGGT
AAACCCTCGA ATACCAACCA TCGCCTGCAA GGCCCAGCCT TTTCTGCCGC CGAGGCCTCA
TGGGGGTTAT CTAACGCGTG GTCGGTGTAC GGGGGCAGTA TTTTGTCCGA TGGCTACCAG
TCCTGGTCGG CAGGCATTGG GAAAAACCTC TACCTGCTGG GCGCGCTGTC CGCTGACGTC
ACACAGTCAC GCGCAACGCT CCCAGCGACG TCGTCGCAAA TGGGCCATGC ATTCTCACTC
AACTGGTCTA AATACTTCAA CTCGATCGAT AGCCAGATCA GTTTCGCGGG CTACCGCTTT
TCAGAAAAAA CCTACATGAG CATGGCGCAG TACCTCTACG CACTGAATCT GGATAACCGC
TATCGCAATG AAAAAGAGCG CTACACCATT ACACTTTCCA AAAATTTCGC GACGCGCGAG
TCATACTCAT GGCTGAGCGG GCTATCGACC TATGTTACCT ATACGCGCCA AACCTACTGG
AATGAAGCCG AACAGGATCG CTACGGGGTT TCGCTGAACA AGTACTTTGA TATCGGCGCC
TTTAAAGGGA TTGCTGCAAA TTTCGCGGCC TATCGCACCG AATTCAACCG CCGTACCGAT
GACAGCCTGT ACCTGAGTTT TTCCATTCCG CTCGGGGAGC GAGATCGTCT GAGCTACAGC
ATGGGGCGCT ATAACGACAG CAGCAATCAG ACGCTGACCT ATTCCAATAA CGCCGATCCG
CGTCGGACCT GGAACCTGAG CACACGGTAC GACAGCAAAG AGCATACCTA CCTGAGCGGC
AACTATACCC ATCTGGCACC GATGACTGAT GCCACCGTGG GCGTAGCCTG GCAGCAGGAT
CGCTATACCT ACCTGAACGG CTCGCTGCGC GGCGGGATTA CCGCCACCCG CCACGGCGTT
GCGGCACACC CGAAAGGCAA TCAAGGGGGC ACCCGCATCA TGGTCGATAC GGAGCAAGCG
GGCGTGCAGT TCAGCGGCAG CCAGGTCGAA ACCAACCGTT ATGGTCTGGC CGTGATTGCC
GGAACCAGCA GCTACTACGA CGTGTCGACC CGCATTGATT TACAGAAATT ACCGTCAACC
ATCGAAGCGA TAACGACGGT CGTTCAGGGC ACGCTGACCG AAGGAGCAAT CGGCTATCGC
AAATTCGACG TAGTGAGCGG AGCAAAAGTC ATGGCACACG TCGCACTGGC CGATGGCACC
TATCCCCCTT TCGCCGCTCA GGTCAAAAAC AAGAAAGGCC GCGATATCGC CATGATCACC
AACGGCGGGC AAGCCTATAT CACGGGCGTC TCGCCTGATG AAACGCTGTC CGTCATCTGG
GAGGGAAGAA CACAGTGTTC CATCACCCTG CCCGCGACCT TAAATCACCT TGATGTGCTG
CTGCTTCCCT GTAAATAA
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| Protein sequence | MDIYNAVSVQ AHIPMAMKNL TFKEKIKSAL FRYGFFIFSL NTTALSATEF NVNVLDVDER
SDIDLSHFSD PEYVTPGTYL LSIKVNAREI QQEMISYLPE GNHQARPTAC LSPELVDKLA
LKKEARDKVE RWNNGECVDL TPIAGVKVSN QIGMGTLNIT IPQAWLAYSD SNWIPPEQWD
HGIGGALLDY NLVGNVRRDT HGRGTSHYLS SYGTAGFNQG AWRYRADYRY FLQKSRNGNR
DRFSWDQFYA YRPLPTLSAD LKLGEMYFSS NLFDSYRFTG VSLANNDNML PPSLRGYAPE
IRGVAKSNAT VTVTQNGRLI YETTVPAGPF AIQDLKNGVS GTLDVRVTEE DGTVTTFQTE
SANLPYLTRP GHVQYKLAAG KPSNTNHRLQ GPAFSAAEAS WGLSNAWSVY GGSILSDGYQ
SWSAGIGKNL YLLGALSADV TQSRATLPAT SSQMGHAFSL NWSKYFNSID SQISFAGYRF
SEKTYMSMAQ YLYALNLDNR YRNEKERYTI TLSKNFATRE SYSWLSGLST YVTYTRQTYW
NEAEQDRYGV SLNKYFDIGA FKGIAANFAA YRTEFNRRTD DSLYLSFSIP LGERDRLSYS
MGRYNDSSNQ TLTYSNNADP RRTWNLSTRY DSKEHTYLSG NYTHLAPMTD ATVGVAWQQD
RYTYLNGSLR GGITATRHGV AAHPKGNQGG TRIMVDTEQA GVQFSGSQVE TNRYGLAVIA
GTSSYYDVST RIDLQKLPST IEAITTVVQG TLTEGAIGYR KFDVVSGAKV MAHVALADGT
YPPFAAQVKN KKGRDIAMIT NGGQAYITGV SPDETLSVIW EGRTQCSITL PATLNHLDVL
LLPCK
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