| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0680 |
|---|
| Symbol | |
|---|
| ID | 8131604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 795381 |
|---|
| End bp | 796736 |
|---|
| Gene Length | 1356 bp |
|---|
| Protein Length | 451 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 644863965 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_003016271 |
|---|
| Protein GI | 253687081 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCGAAC GGAACACGAC CGCAGCACAA ACTGAACAGG ATATCCGGCT GGCGCTGCTG
GCCGAACTAT TACAACTGCA AAGCCGTGCC AGAGCGCGTG AAACGCTGGA TGAACTGGCG
TTTTTTATCG TCAACGAGAC GCATAACGTA GTGAAGTATC GTCAGGCGCT GCTGTGGGAC
TGCGATAAAC AGCGCTTGCA GGCAGCTTCC GGGCTGGCCT CGCTTGATCA CAACGCGCCA
TTTTGTACCG AATTTAGTCG CTTGTGCCGC CAGTGGCAGG AAGAAGGGCG TCAAACGCAG
GCGCTGCAAT GCCGCGAGCT GCCTGCCGAT GACCAAATTT TGTGGCAGGA ACATCTGCCG
GAGTTTTTAC TTTGGCTGCC GCTGCGTTTA CCGCAGGGTG ATGCGCCGCT TGTGCTGGTG
CTAGCGCGGG ACAGCGCGTG GCTGCCTGCT GAGATCGTGC TGCTGGAAAA ACTGGCGGAC
GCCTACGCGC ACGCCTGGTC GAGTTTGCTG AAGCAACGTC GTCGGCAGAC CAACACCAGT
CCGAAGAAAC GTCGTTTGAT CCTGGCGGGG ATCGTGGCGT TGGTGCTGAT CTTATTGATC
CCGGTTCGCC AGTCGGTGCT GGCGCCGGCG GAGATCGTCG CACACCGTCC GGTGATGGTG
CGTGCGCCTG TGGCGGGCGT GGTGGATGAT ATTCTGGTTC GTCCTAATCA GAGTGTCAGT
GCCAATCAGC CGCTGGTGCG GCTGGACGTG CGCGAACTGG AAAATCGGCT GGAATCCGCG
CGGCAGGCGT TTGCTACGGC TGATGCCCAA TATCGTCAGG CACAGCAGCA GGCGCTGTTC
GATGCCAATA GCAAAGCCAG TCTGGCCGTG CTGCAAAGCC GCCGCGAGCA GGCGCAGAGC
GACATGGATT TTCTCCAACG TCAGCAAGAA CGCATGCAGC TTACTTCCCC GCGCGACGGC
GTGGCGATTT TTGATGATAG CAACGACTGG ATTGGGCGCT CGGTGGCGGT GGGAGAACGC
ATCATGATGA TCGCCGATCC GCACGATGTT GAACTGGAGA TCCAGTTGCC CGCAGCGGAT
GCGATTGCGC TGGAAAACGG CGCGGACGTG CGCCTGTTCC TCAACGTTGC ACCGAATTCG
GCACAGGACG CGCGGCTTGA GCAGATTGGC TACCGCGCCG CGCCAACGCC GGATAATGTG
ATGGCCTATC GACTGCGGGC GCGCTTTACG CAGGATGATC CACAGCTGCG CGTGGGCCTG
AAGGGGACGG CTAAGCTGTA CGGGAAACGC ACGGTGCTGT TTGTTTACCT GCTGCGTAAA
CCGCTGGCCT CTCTGCGCGT CTGGCTAGGG GTTTAA
|
|---|
| Protein sequence | MTERNTTAAQ TEQDIRLALL AELLQLQSRA RARETLDELA FFIVNETHNV VKYRQALLWD
CDKQRLQAAS GLASLDHNAP FCTEFSRLCR QWQEEGRQTQ ALQCRELPAD DQILWQEHLP
EFLLWLPLRL PQGDAPLVLV LARDSAWLPA EIVLLEKLAD AYAHAWSSLL KQRRRQTNTS
PKKRRLILAG IVALVLILLI PVRQSVLAPA EIVAHRPVMV RAPVAGVVDD ILVRPNQSVS
ANQPLVRLDV RELENRLESA RQAFATADAQ YRQAQQQALF DANSKASLAV LQSRREQAQS
DMDFLQRQQE RMQLTSPRDG VAIFDDSNDW IGRSVAVGER IMMIADPHDV ELEIQLPAAD
AIALENGADV RLFLNVAPNS AQDARLEQIG YRAAPTPDNV MAYRLRARFT QDDPQLRVGL
KGTAKLYGKR TVLFVYLLRK PLASLRVWLG V
|
|---|
| |