| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0488 |
|---|
| Symbol | |
|---|
| ID | 8131404 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 572709 |
|---|
| End bp | 575033 |
|---|
| Gene Length | 2325 bp |
|---|
| Protein Length | 774 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 55% |
|---|
| IMG OID | 644863766 |
|---|
| Product | outer membrane autotransporter barrel domain protein |
|---|
| Protein accession | YP_003016080 |
|---|
| Protein GI | 253686890 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
|---|
| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.510592 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACGTTTT CATCATTCAA AGCGAAACCT TTGGCGTTAG CTGTGGGAGC TGTCGTTGGA
TTAATGGCCT CTTATCCGGC GTTGTCAGCC TCGAATGATA TTGTGGTATC AACAAGTACC
ACTGGCCTCA CTCTGACGAC GGGTAGTCAC ACTTCCCTTG ATTCGGTGGA AGTTACCAGT
ACGGGGGCGT TGAGCGGTAG CTTCTATGGC ATCAACAATA GCACCACCAT TGGTAGCATT
ATCAATGCGG GTACGATCAG CGGTTCTGAA GGCCTCTTTT CCACGGGAAC TATCGGCAGC
ATTATCAATA GCGGCTTGAT TGAATCTTCT TGGGATGCGG CGCTCTGGGC GGAAGGAGCG
GCAAGTACCA TCAACGCTAT CGACAATCGC GGCACCATTA ATGGTGCTGT CGCCGTGGTG
GTTCAGGGCG GCGCACATTT AGGGACGCTC ACCAACTCCG GCACCATCAG TGGTAGCTAT
GGTATCGCCA ATTTTGGCAG TGGAGGCACG ATTGACAGTA TCATCAATAC TGGGCTCATC
AGTAGCAATA GCGCCATCTA CAATGCCTCT GCTACCCTTG GTTCGATCGC CAATAGCGGC
GTGATCGCGG GCGATATCTA TTCTGCGTCG GGATTAATCT TCAACGGTGG TGAGGGGGTA
ACCTTTGGTA CCTTGACGGG ATATGATCAG GCGACTCAAG GGAGCATTAA TATCAATAAT
GGCGATCTGG TTTTCGCCTC CGGTAACCTG CTGTTGAACG ACAACGTCAC CGTGAGTTCA
GGTGTGATGT CCAATCAGGC GGCGGCATTG CAGATCAACA ATACCGTTAC CCTGAACGGG
AATTATGTGC AAGGCAGCGA TGCCACCCTG TTGATTGGCG TCGCGGATGA TGCGGTGGCA
ACGGGGGATA TCACTACCGA CAGCGGTTAC GGACGTCTGG TTGTTTCCGG CACGGCCAAT
ATTGCCAGCG GCTCTACGGT ATCTCTGGTT AGCCTGAATA ACTATGCGTT TGCCAATGGG
CAGCGCTATG TCGTGGCTCA GGCTGCGGCA GAAGGCACCG AGTATAATGC CAGCAGCCTG
AATTATCTGG CCAGCGGCTA TAACGGTGTG ATAACGGGCA GCGCGCAGGC TGACAGCGTT
AACAGCGGCC TGAGCGATTT GGTGGTCACG CTTGGCACTT CTGGCCCTTC CCGCAACGCC
ACGACCGGCA ATGCGATCTC TTCGTTCAAT GGCTTGTTTA ATTATGGCGG CACCGATACG
TCGCTGCTGA ATGTATTTAA TGCCAGCGCC ACGCTAGGTT CCAGCGAGGA GGCCAACCGT
GCAGGCGCTC GACTGAGCCC GGCGGCGGTG GCCTCTGCAT CCGCGCAGGC GTCTTCCGCT
CCAACCAACG CTATTCTGAA TGTGGTTTCC CAACGTGCGG ATGCGATTCG TGTTTCGGGT
GGCAACAGCG GCGTTGCTAC GGGTGAAGGC GACAGCGATG TGGTGATGTG GGGCCAGGGT
TTTGGTGGTA AAGCCAATCA AGGGCAACGT AGTGATGTTT CCGGTTACGA TGCGCGCTTT
GGCGGCTTGT TGATCGGTGC GGACCGCGCA GTCAGCGACA GTTGGCGTCT GGGCGGGTTG
GGCAGCTATG CTGCGACTAA CGTGGATAGC ACCGGTGATA ATGACGGCAG CACCGTACGG
ATCAAATCCT ATGGTCTGTT CGGCTATGCG AATTACGAGG GGCGTCCCTG GTTCCTGAAT
CTGTCCACTG GCGTGGTGCG TCATCAGTAT GATACCCAAC GTCTGATTGA CTTTAGCGGC
TTTAGTGGCA ATGCCACAGG GTCGTTTAAC GGTATGCAAT ATGTCGTTTC TGGCCAGACG
GGCTATCCGT TCAAACTGGG GGCGACAGAG ACTACGCTGA CGCCGATTGC TGGTTTGACC
TACAGCATCC TCAAGCAGCA AGGCTATACC GAATCGGGTG GCAATGGGGC GGGCTTAACG
GTAGGTGATG CGACCTCTAC GTCTCTCAAA AGTGATGTGG CATTGAAACT GGATCGTCGT
ATTGCGCTGT CGGGTGGTGA GGTGCAGCCG TTTATTCAAC TGGGATGGCG CCATGAGTTC
CACGATGATG CGATGCAATC CGCTGCCAAC TTTGCTGCTG ATAGCACGGG TGCAACCGAC
TTTGTCACAA CCGGTTCTCG TCCGGTGGCT GACAGCGGCG TATTGTCGGT TGGGACGACG
ATCGTGAGCC AACGTAACCT GAGTCTGACT CTCAAATACA CAGGGGAAGC GGCTCGTAGC
TACGAAAGCC ATTCCGGCAA CCTGCAAGTG CGCTGGCAGT TCTAA
|
|---|
| Protein sequence | MTFSSFKAKP LALAVGAVVG LMASYPALSA SNDIVVSTST TGLTLTTGSH TSLDSVEVTS
TGALSGSFYG INNSTTIGSI INAGTISGSE GLFSTGTIGS IINSGLIESS WDAALWAEGA
ASTINAIDNR GTINGAVAVV VQGGAHLGTL TNSGTISGSY GIANFGSGGT IDSIINTGLI
SSNSAIYNAS ATLGSIANSG VIAGDIYSAS GLIFNGGEGV TFGTLTGYDQ ATQGSININN
GDLVFASGNL LLNDNVTVSS GVMSNQAAAL QINNTVTLNG NYVQGSDATL LIGVADDAVA
TGDITTDSGY GRLVVSGTAN IASGSTVSLV SLNNYAFANG QRYVVAQAAA EGTEYNASSL
NYLASGYNGV ITGSAQADSV NSGLSDLVVT LGTSGPSRNA TTGNAISSFN GLFNYGGTDT
SLLNVFNASA TLGSSEEANR AGARLSPAAV ASASAQASSA PTNAILNVVS QRADAIRVSG
GNSGVATGEG DSDVVMWGQG FGGKANQGQR SDVSGYDARF GGLLIGADRA VSDSWRLGGL
GSYAATNVDS TGDNDGSTVR IKSYGLFGYA NYEGRPWFLN LSTGVVRHQY DTQRLIDFSG
FSGNATGSFN GMQYVVSGQT GYPFKLGATE TTLTPIAGLT YSILKQQGYT ESGGNGAGLT
VGDATSTSLK SDVALKLDRR IALSGGEVQP FIQLGWRHEF HDDAMQSAAN FAADSTGATD
FVTTGSRPVA DSGVLSVGTT IVSQRNLSLT LKYTGEAARS YESHSGNLQV RWQF
|
|---|
| |