Gene PC1_0344 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_0344 
Symbol 
ID8131258 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp398863 
End bp399840 
Gene Length978 bp 
Protein Length325 aa 
Translation table11 
GC content49% 
IMG OID644863624 
ProductTRAP dicarboxylate transporter, DctP subunit 
Protein accessionYP_003015939 
Protein GI253686749 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component 
TIGRFAM ID[TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCTGT CGAAAACATT GATCGGCGTT TGTCTGGGTT CTACTGCACT CCTGATGAGC 
CACGCGATTC AGGCACAACA AATTAAAGCC TCTGATGTTC ACCCTGAAGG TTACCCTAAT 
GTCGTCGCAG TTCAGAAAAT GGGAGAGAAA TTAAAAGCCG CCACAGGTGG CAGGCTGGAA 
ATTAAAACCT TCCCCGGCGG CGTATTGGGT GATGAGAAGC AGATGATTGA GCAGGCGCAG 
ATCGGCGCGA TTGATATTAT CCGTGTATCA ATGACGCCCG TTGCCGCGAT TTTACCGGAA 
ATAGAAGTCT TCACGCTGCC CTATATTTTC CGTGATGAAG ATCATATGCA TAAAGTACTG 
GATGGAAAAA TCGGCCAGGA AATTGGTGAC AAAATTACCC AAAGCAGTAA ATCAAAATTG 
GTTTTTCTGG GCTGGATGGA CGCGGGAACG CGTAACTTAA TCACCAAAGA GCCAGTGGTG 
AAACCGGAAG ACCTCAAGGG CATGAAAATT CGCGTCCAGG GCAGTCCGGT CGCGCTCGCC 
ACGCTAAAAG CCATGGGCGC CAACTCGATC GCGATGGGCG TTAGTGAAGT CTTCAGCGGC 
ATGCAAACCG GCGTCATTGA CGGCACCGAG AATAACCCAC CAACGTTTGT CGCACACAAC 
TACCTGCCTG TCGTGAAAAA CTATACCTGG AGCCGCCACT TCATTATTCC TGAACTGTTC 
CTGTACTCCA AAACCAAATG GGACAAACTT TCTAAAGAGG ATCAGGATCT TATCCTGAAG 
CTGGCGAAAG AAGCACAGCA AGAACAGCGC GTGCTGTGGA ATGAATATAC TCAGCAATCT 
CTGGATAAAA TGAAGGCCGG TGGCGTGCAG TTCCATGACA TTGATACCGA GTACTATTTC 
AAAGCCACGC AGCCCGTACG CGATCAGTTT GGTGCCAAAT ATCAGGATCT GATTAAAGCC 
GTCGCTGACG TCAAATAA
 
Protein sequence
MKLSKTLIGV CLGSTALLMS HAIQAQQIKA SDVHPEGYPN VVAVQKMGEK LKAATGGRLE 
IKTFPGGVLG DEKQMIEQAQ IGAIDIIRVS MTPVAAILPE IEVFTLPYIF RDEDHMHKVL 
DGKIGQEIGD KITQSSKSKL VFLGWMDAGT RNLITKEPVV KPEDLKGMKI RVQGSPVALA 
TLKAMGANSI AMGVSEVFSG MQTGVIDGTE NNPPTFVAHN YLPVVKNYTW SRHFIIPELF 
LYSKTKWDKL SKEDQDLILK LAKEAQQEQR VLWNEYTQQS LDKMKAGGVQ FHDIDTEYYF 
KATQPVRDQF GAKYQDLIKA VADVK