| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0342 |
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| Symbol | |
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| ID | 8131256 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 396934 |
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| End bp | 398226 |
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| Gene Length | 1293 bp |
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| Protein Length | 430 aa |
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| Translation table | 11 |
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| GC content | 54% |
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| IMG OID | 644863622 |
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| Product | TRAP dicarboxylate transporter, DctM subunit |
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| Protein accession | YP_003015937 |
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| Protein GI | 253686747 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
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| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGGATGCAT TTATTCTGAT TGCCTCACTG GCCGTGTTGT TAGCGGTCGG TGTTCCCGTC
GCCTACGCGG TAGGGTTGAG CGCCATTGTT GGCGCGCTCT GGATCGATCT GCCGCTTGAG
GCTGTCATGA TCCAGGTTAC CAACGGCGTG AACAAATTTT CGCTGCTGGC AATTCCTTTC
TTTATTCTGG CTGGGGCAAT TATGGCCGAA GGCGGGATTG CTCGTCGGCT GGTCAGCTTC
GCTTACATCT TTGTCGGCTT TATTCGCGGC GGCTTATCGT TGGTTAATAT CGTCGCCTCT
ACCTTTTTCG GCGCGATATC TGGCTCCTCC GTCGCAGACA CAGCCTCAAT CGGCTCGGTG
ATGATCCCGG AAATGGAGAA GAAAGGTTAT CCGCGCGACT TCTCCGCCGC CGTGACCGCC
AGCGGATCCG TACAGGCCAT TTTGACACCG CCGAGTCACA ACTCCGTGAT CTATTCGCTG
GCAACCGGCG GTACGGTTTC AATTGCCTCG CTGTTTATCG CAGGGATCCT GCCTGGTCTG
CTGCTCAGCC TGACCATGAT GGTGATGTGC GTCGGCTTTG CCCATCGCCG CGGCTATCCA
AAAGGCGAAC GTGTGCCGTT CCGTCAGGCG CTGAAAATCT TTGTCGATAC CCTATGGGGG
CTGATGACGG TCGTCATTAT CATGGGGGGG ATTCTGTCAG GTATTTTTAC CGCGACCGAG
TCTGCGGCCA TCGCCTGTCT GTGGTCCTTC TTCGTGACTA TGTTTATCTA TAAAGATTAC
AAGTGGTCGG AACTGCCCAA GCTGATGTAC CGCACGGTCA AAACCGTCAC GATCGTGATG
ATCCTGATCG GTTTCGCCGC CGCATTCGGT GCCATCATGA CCTACATGCA GTTGCCCGCA
CGCATCACCG AGTTTTTTAC CTCCATCTCG GATAACAAAT ACGTCATCCT GATGTGTATT
AACATCATGC TGCTTCTGCT GGGTACGCTG ATGGATATGG CGCCGCTGAT CCTGATCCTG
ACACCTGTTT TGCTGCCCGT CGCTCTCTCG CTCGGCATCG ATCCGGTGCA TTTCGGCATG
ATCATGTTGG TGAACCTCGG GATTGGTCTG ATTACACCAC CGGTGGGATC AGTGCTTTTC
GTCGCCAGTG CGGTGAGTAA ACAGAAGATA GAACAGGTCG TTAAAGCGAT GCTGCCCTTC
TACTGTGGGC TCTTTCTTGT GCTGATGCTG GTCACGTATA TTCCGGCCAT TTCGCTGTGG
CTGCCCAAAC TCTTTGGCGT TCATACGGGT TAA
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| Protein sequence | MDAFILIASL AVLLAVGVPV AYAVGLSAIV GALWIDLPLE AVMIQVTNGV NKFSLLAIPF
FILAGAIMAE GGIARRLVSF AYIFVGFIRG GLSLVNIVAS TFFGAISGSS VADTASIGSV
MIPEMEKKGY PRDFSAAVTA SGSVQAILTP PSHNSVIYSL ATGGTVSIAS LFIAGILPGL
LLSLTMMVMC VGFAHRRGYP KGERVPFRQA LKIFVDTLWG LMTVVIIMGG ILSGIFTATE
SAAIACLWSF FVTMFIYKDY KWSELPKLMY RTVKTVTIVM ILIGFAAAFG AIMTYMQLPA
RITEFFTSIS DNKYVILMCI NIMLLLLGTL MDMAPLILIL TPVLLPVALS LGIDPVHFGM
IMLVNLGIGL ITPPVGSVLF VASAVSKQKI EQVVKAMLPF YCGLFLVLML VTYIPAISLW
LPKLFGVHTG
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