| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0308 |
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| Symbol | |
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| ID | 8131221 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 357722 |
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| End bp | 359740 |
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| Gene Length | 2019 bp |
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| Protein Length | 672 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644863588 |
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| Product | LppC family lipoprotein |
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| Protein accession | YP_003015903 |
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| Protein GI | 253686713 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3107] Putative lipoprotein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTTCCCT TTCATTTCGT CCGTACCCAG GCAGGGCGTG CTATCCCTGT TTTGTTAGCG
GCACTGTTTC TCGCAGGCTG TCCAAGCCAA GCACCGCAGA GCCCACCACC CGAGGTTCAG
GGCAAAGCCG ACGCATCATC CGATTATTAT CTGCAACAGA TGCAGCAAAG TAGCGATAAT
AACAAGGCTG ACTGGCAATT ACTTGCTATT CGTTCCCTGT TACAGGAAGG GAAAGCCCCT
CAGGCAAGCC AGCAGTTCAA CGCGCTCCCA GAAAAACTGA GCGCGGCGCA AAAACAAGAA
CAGCAGCTAC TCAGCGCGGA ATTGTCCGTC GCCCAGAACA ATATGGATGC AGCCAAGGCA
GCACTGAGCC AGCTTGATGT GAGCGCACTT TCCGATCAGC AGAAGCAGCG TTATTACCAG
ACGCAAATCA AAACTGCGCA AGGGCGCACG TCCATTGAGC TGCTGCGCGC CTATATTGCT
CAGGAGCCGC TGCTGAAAGG CGACGAGCAT CAAATGAACC TCGATCAGAC GTGGCTGGCA
TTGACGCAAA TGTCACCGCA GGAGTCTGGG GCGCTGCTGA TTAACGCGAA TGAAAATGTG
CTTCAGGGCT GGGTGGATTT GCTGAATAAC TACCAGAACA ATCGCGAGTC CCCTGACCAG
CTACAGAGCG CCATTCAGGA CTGGCAAACC CGTTATCCGC ATCACCCTGC CGCGAAAAAA
CTGCCTACGC AGTTAAATCA GGTCATCAAT TATCAACCGT CGTCTGTAAG TAGCATCGCG
TTGCTGTTGC CGCTTAACGG TCAGGCACAG GTTTTCGCCA ATGCGATCCA GCAAGGTTTT
AACGCAGCAA AGAATGGCCA GATAGCCACC GCTCCCGTAT CTGCTCCTGC TGCACCGGTA
ACGGACACTA CGCAAGACGG GCAGGTAACA CCATCATCTG ATGGACAGAG CGCTCAATCG
CCTGCGCCAT ACAGCGATCA GGCGGTTGCA TCAACGACAC AAGCGCCCGA AGCACAACCG
ACAAGCGCAG GGCTATCCAA TTCGCTCCCG GTAAAAGTGT ATGACACCTC TTCACAGCCG
CTGGCCAATA TTCTCACGCA GGCACAGCAA GATGGCGCAT CACTGGTCAT TGGTCCGCTG
TTGAAAAATG AAGTGGATCA ATTGGCGAAT AGCCAGTCGC CGCTGAATAT TTTGGCGTTG
AACCAGCCGG AGCACGTCGA AAATAGCCCT AACATCTGCT ATTTCGCCCT CTCTCCGGAA
GATGAAGCCA GAGACGCGGC CAAGTTCATC CATCAGCAGG GTAAACAGCA GCCGCTGGTC
TTAGCCCCTC GCGGTGCGCT GGGCGACCGT ATCGTCAACG CCTTCGCTCA GGCCTGGAAC
CAGCAAAGTG GCACCAGTCC TCTGCAGCAG CGCTTTGGCA ACACGGCGGA GTTAAAGCAG
GCCATCAATA GCGGTGCAGG CTTAAGCCTG AGCGGCCAAC CTGTCAGCGT ATCGCAACAA
CAGGCACAGC CGGGCACCAC CATCGGGGGC TTAACCATTC CGTCACAGGT TCAACCGACG
GTCAGTTCGT CCGTTAGTGG CAATATCGAT GCGGTCTATA TCATCGCAAC GCCAGACGAG
CTGGCGCTGA TTAAGCCGAT GATCGACATG CGCACGACCT CACGCGCACG TCCAGCGCTC
TATGCCAGCT CACGTAGCTT CCAGGCGGGA TTAGGCCCTG ACTTCCGTCT CGAAATGGAA
GGTTTACAGT TCAGCGATAT CCCGCTGTTA GCAGGCGCAA ATCCAGCACT GATGCAACAG
GTCAGCAGTC AGTTTAAAAA CGATTACTCG TTAGTTCGCC TGTATGCCAT GGGGATGGAT
GCCTGGACGC TCGCCAGCCA CTTTGGTGAA ATGCGCCAGA TTCCGGGTCA CCAGATTCCT
GGGGCGACGG GGATGTTAAG CTCAGGGCCG GATTGCACCA TCAATCGGCA GTTAACCTGG
CAGCAATATC GTCAGGGTCA GCTGGTGCCG GTTCTCTGA
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| Protein sequence | MLPFHFVRTQ AGRAIPVLLA ALFLAGCPSQ APQSPPPEVQ GKADASSDYY LQQMQQSSDN
NKADWQLLAI RSLLQEGKAP QASQQFNALP EKLSAAQKQE QQLLSAELSV AQNNMDAAKA
ALSQLDVSAL SDQQKQRYYQ TQIKTAQGRT SIELLRAYIA QEPLLKGDEH QMNLDQTWLA
LTQMSPQESG ALLINANENV LQGWVDLLNN YQNNRESPDQ LQSAIQDWQT RYPHHPAAKK
LPTQLNQVIN YQPSSVSSIA LLLPLNGQAQ VFANAIQQGF NAAKNGQIAT APVSAPAAPV
TDTTQDGQVT PSSDGQSAQS PAPYSDQAVA STTQAPEAQP TSAGLSNSLP VKVYDTSSQP
LANILTQAQQ DGASLVIGPL LKNEVDQLAN SQSPLNILAL NQPEHVENSP NICYFALSPE
DEARDAAKFI HQQGKQQPLV LAPRGALGDR IVNAFAQAWN QQSGTSPLQQ RFGNTAELKQ
AINSGAGLSL SGQPVSVSQQ QAQPGTTIGG LTIPSQVQPT VSSSVSGNID AVYIIATPDE
LALIKPMIDM RTTSRARPAL YASSRSFQAG LGPDFRLEME GLQFSDIPLL AGANPALMQQ
VSSQFKNDYS LVRLYAMGMD AWTLASHFGE MRQIPGHQIP GATGMLSSGP DCTINRQLTW
QQYRQGQLVP VL
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