| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0302 |
|---|
| Symbol | |
|---|
| ID | 8131215 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 353254 |
|---|
| End bp | 353907 |
|---|
| Gene Length | 654 bp |
|---|
| Protein Length | 217 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644863582 |
|---|
| Product | isoprenoid biosynthesis protein with amidotransferase-like domain |
|---|
| Protein accession | YP_003015897 |
|---|
| Protein GI | 253686707 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG3155] Uncharacterized protein involved in an early stage of isoprenoid biosynthesis |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0305072 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGAG TCGGCATTGT CCTTAGTGGC TGTGGTGTTT ATGACGGTTC CGAGATTCAT
GAAGCCGTGT TGACATTACT TGCGCTGGAT CGCGCAGGCG CACAAGCGGT TTGCTTTGCG
CCAGATAAGC CGCAATTACA GGTGGTTAAT CACCTGACGG GTGACGTAAC TGGTGAGAAT
CGCAACGTTT TAGCAGAATC GGCACGGATC GCCAGAGGAA AAATCCAGCC CCTTTCTACC
GCGAATGCAC AAGATTTAGA TGCACTGATT GTGCCGGGTG GTTTTGGCGC GGCGAAAAAT
TTAAGTGACT TCGCGACGCA GGGATCGGCC TGTCAGATTG ATGAAACGCT GCAATTGCTC
ACACAGGAAA TTTATAAGCA AAATAAACCA ATTGGTTTTA TTTGCATCTC GCCCGCGTTA
CTGCCGACGA TTTTGGGTGA ACCTGTTCGC GTAACCATTG GTAACGATAT TGATACCGCT
GAAGCCGTCG AAGAGATGGG CGGTATCCAC GTTGTTTGTC CGGTCGATGA TATCGTGGTG
GATGAGGAAC ATAAAATCGT GACGACACCA GCCTATATGC TGGCTAACTC CATCAGCGAA
GCGGCACAAG GCATTGATAA GCTCGTGGCC CGCGTTTTGG ATCTCACCGA ATGA
|
|---|
| Protein sequence | MKRVGIVLSG CGVYDGSEIH EAVLTLLALD RAGAQAVCFA PDKPQLQVVN HLTGDVTGEN
RNVLAESARI ARGKIQPLST ANAQDLDALI VPGGFGAAKN LSDFATQGSA CQIDETLQLL
TQEIYKQNKP IGFICISPAL LPTILGEPVR VTIGNDIDTA EAVEEMGGIH VVCPVDDIVV
DEEHKIVTTP AYMLANSISE AAQGIDKLVA RVLDLTE
|
|---|
| |