| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0276 |
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| Symbol | |
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| ID | 8131189 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 324760 |
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| End bp | 325332 |
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| Gene Length | 573 bp |
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| Protein Length | 190 aa |
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| Translation table | 11 |
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| GC content | 52% |
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| IMG OID | 644863556 |
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| Product | lipopolysaccharide transport periplasmic protein LptA |
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| Protein accession | YP_003015871 |
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| Protein GI | 253686681 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1934] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03002] lipopolysaccharide transport periplasmic protein LptA |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0311412 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGAAATCCA AAACCAATAA CCTGATGCGT AACACCCTGA TCGCCAGCTC GCTGTTTGCC
GTCAGCGTTT CCGCCTTTGC CGTCACGGGC GATAGCAACC AACCTATTCG CATTGATTCA
GCACAGCAAT CTCTGGACAT GCAGGGCAAT ACGGTGACGT TCACCGGCAA TGTTGTCGTG
AAACAAGGGA CGATTGAAGT AAAAGCCGAC AAGGTCGTCG TGACACGCCC ACAAGGCACG
CAAGGCAGTG AAGTGGTAGA AGGCTACGGT AACCCTGTGA CGTTCTACCA GATGCAGGAC
AACGGCAAAC CGGTGAAAGG TCACGCGCAG AAAATCCGCT ACGAGCTGGC CAAAGACCTT
CTGGTGCTGA CAGGCAATGC CTATCTGGAA CAGCAGGATA GCAATGTCAA AGGCGATCGC
ATCACTTATC TGGTGAAACA GCAGCAGATG GAAGCGACCA GCGAAAAAGG AAAGCGCGTA
ACGACGGTAT TGGTTCCCTC TCAGCTTCAA GATAAAGAGA ACAAGAGCCA GCCTTCTCGT
TCTCAACAAC CGCAACCACG GGTCACTGAG TAA
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| Protein sequence | MKSKTNNLMR NTLIASSLFA VSVSAFAVTG DSNQPIRIDS AQQSLDMQGN TVTFTGNVVV
KQGTIEVKAD KVVVTRPQGT QGSEVVEGYG NPVTFYQMQD NGKPVKGHAQ KIRYELAKDL
LVLTGNAYLE QQDSNVKGDR ITYLVKQQQM EATSEKGKRV TTVLVPSQLQ DKENKSQPSR
SQQPQPRVTE
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