Gene PC1_0251 details

Gene Information

• Locus tag: PC1_0251
• ID: 8131164
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 294076
• End bp: 296013
• Gene Length: 1938 bp
• Protein Length: 645 aa
• Translation table: 11
• GC content: 54%
• IMG OID: 644863531
• Product: regulatory protein CsrD
• Protein accession: YP_003015846
• Protein GI: 253686656
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG2200] FOG: EAL domain
• TIGRFAM ID: [TIGR00254] diguanylate cyclase (GGDEF) domain

Plasmid Coverage information

• Num covering plasmid clones: 3
• Plasmid unclonability p-value: 0.0597228
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGGATTTA CGACCAGATT TTCGATACTT GTGGTATTGC TGACGGTTCT CGCCATTTTT 
CTTATGCTTT TCAGTAGCAT ATTTAGCCTC TGTTATTACA GCCAGTTGCG GACTGAGCAG 
CAGTTGCGTG AGGTTACGGC CAGTATCGAT CAGGCGTTAT TAGTGCAATC GCCTGAAAAT 
ATCCAATATT GGCTGCCGAG CATGATGAAA ACGGCAGGCA TTGTTGTGCT GGATATTCAG 
GATAACGATT CGACCCTCTA TTCAATACAG CTCCCTGAGG CCGGCTGGGA ACGCACGCAC 
CTCTATCATG AGGTCGAATT TCCACTGATG CACCACCTGA ACATGACGAT AGCCATACGG 
TATGTCGATC CGCTGATTGG CTTACCGCGC TTTGTGGTGT CGATGCTATC GGTGCTGTTG 
GCTGCGGGTC TGATGCTTTT GATGCTGTAC TTCTCCATCC GCTGGCTGCG CCGTCAGGCC 
GCGGGACAGG AAGAATTGGA AGAACGCGCG CAGCGTATTC TCAAGGGCGA ACGTGAATCG 
GTTATGCAGG GGTCGGTACG TGAATGGCCG GTCAATACCA GCGGGGCGCT CGATCAACTG 
CTGTCTGATT TAGTGGAGGC ACGGGAGGAG CGCGGGCGAG TTGATACCTT AATTCGCGCG 
TTCGCCGCAC AGGATGCCGA AACCGGGCTG AGTAATCGTC TGTTTTTTGA TAATCAACTG 
ACCACACAGT TGGAGGATGG CGAAGAAGTG GGGACGCACG GCGTCGTCAT GATGATCCGC 
GTACCCGATT TTGAAACTTT GCAGGAAACG CACGGTTATA GCAGTGCGCT TCAGGAATAC 
CGTTTCACGC TGGTCAATCT GCTGTCGACG TTTGTCATGC GCTATCCCTC CGCGCTGCTG 
GCGCGCTATT TCAGCAGCGA TTTCACCGTA TTACTCCCTC ATAGCACGCT AAAAGAAGCC 
AATGCGATTG CCACGCAACT GGTGAAGTCC ATCGATATTC TCCCTGCCTG CCCGTTGATC 
GATCGGGAAG AAGTGCTCCA CATTGGTATC TGTGCCTATC GCGGCGGGCA AAGCGCCGAG 
CAGGTGATGG AAAGTGTGGA AGACGCGACG CGCAATGCGG TGTTGCAGGG CGGTAATAGC 
TGGTGCGTGT TTGACAGACA AGTGCCAGAG AAAGGGCGCG GCAGTGTGAA ATGGCGCACC 
TTGCTGGAAC AGACGTTGGC GCGTGGCGGT CCGAGGCTGT ATCAGAAACC CGCTGTCACC 
AAAGAGGGCG TGGTGCATCA TCGCGAAATG ATGAGCCGGA TCTACGATGG GGAACAGGAA 
CTGCTCGCCG CGGAGTATAT GCCGCTGGTT CAACAACTGG GGCTGGCAGC CAGCTATGAT 
CGGCAGCTTG TGGCGCGAAT TATTGATTTG TCCGCGAACT GGCCGGGGGA AACACTGGCT 
TTGCCGGTAA GTGTGGACTC ACTTTTGCAG AAGCCTTTCC TGCGTTGGCT GAAAGAAGTC 
TTACTACAAT GTCCGAAAAC GCAGCGGCAG CGCATTTTAT TTGAACTTGC AGAGGCAGAT 
GTTTGTCAAT ATATCGGCCG CCTGCGCCCG GTTCTCACTG TGATCCTGGG ATTAGGCTGT 
CGTCTGGCGG TAACGCAGGC GGGTTTAACA CTGGTCAGTA CGACATATAT CAAGTCACTC 
CCCGTGGAGA TCATCAAGCT TCATCCCGGT TTGGTGCGTA GTCTTGAACG TCGTCCGGAA 
AATCAGCTGT TTGTACAAAG CCTGACCGAA GCCTGTAAAG GCACGCAAAC GCGAGTGTTT 
GCCGCTGGCG TGCGGACCAA AGAGGAGTGG CGAATGCTGT TGGGCAAGGG GGTCTATGGT 
GGGCAAGGGG ATTTTTTTGC CGCATCAGTC CTTGTAACGG ATGAGCTGAA AAAATATTCA 
TCGCAGCATC GCGTTTAA 

 

Protein sequence

MGFTTRFSIL VVLLTVLAIF LMLFSSIFSL CYYSQLRTEQ QLREVTASID QALLVQSPEN 
IQYWLPSMMK TAGIVVLDIQ DNDSTLYSIQ LPEAGWERTH LYHEVEFPLM HHLNMTIAIR 
YVDPLIGLPR FVVSMLSVLL AAGLMLLMLY FSIRWLRRQA AGQEELEERA QRILKGERES 
VMQGSVREWP VNTSGALDQL LSDLVEAREE RGRVDTLIRA FAAQDAETGL SNRLFFDNQL 
TTQLEDGEEV GTHGVVMMIR VPDFETLQET HGYSSALQEY RFTLVNLLST FVMRYPSALL 
ARYFSSDFTV LLPHSTLKEA NAIATQLVKS IDILPACPLI DREEVLHIGI CAYRGGQSAE 
QVMESVEDAT RNAVLQGGNS WCVFDRQVPE KGRGSVKWRT LLEQTLARGG PRLYQKPAVT 
KEGVVHHREM MSRIYDGEQE LLAAEYMPLV QQLGLAASYD RQLVARIIDL SANWPGETLA 
LPVSVDSLLQ KPFLRWLKEV LLQCPKTQRQ RILFELAEAD VCQYIGRLRP VLTVILGLGC 
RLAVTQAGLT LVSTTYIKSL PVEIIKLHPG LVRSLERRPE NQLFVQSLTE ACKGTQTRVF 
AAGVRTKEEW RMLLGKGVYG GQGDFFAASV LVTDELKKYS SQHRV