| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0182 |
|---|
| Symbol | |
|---|
| ID | 8131082 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 211592 |
|---|
| End bp | 212398 |
|---|
| Gene Length | 807 bp |
|---|
| Protein Length | 268 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 644863451 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_003015779 |
|---|
| Protein GI | 253686589 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG1177] ABC-type spermidine/putrescine transport system, permease component II |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAACG TACTGTGGTG GATCCCGAGA ATGCTGATTC TGGGGACGCT GATCTTCTTG
ATCTTTGGGC CATTGGCTAA CCTCCTGCTG TGGTCGGTGG CGGAAAAATG GTTCTATCCT
CACCTTTTGC CCAATGACTG GGGCTTCGCC TTCTGGAAGC GGGTATTTTC ACCGCGCGGT
GTGGCTTGGG AAGCGTTGGG GAATAGCGTG CTGGTGGCGG TGTTCACCGT GCTGGCCTCG
CTGTCGCTGG CGATTCCGGC AGGATATGCG CTGGCACGCC TGCCGCTGCC TGCTCGTGGA
TTGATACTGC TGATATTCCT GATCCCACAG GCGTTTCCGA ACCTGACGGT GTACGTCAAT
ATCGCTCGCC TGTTCTATCA GTGGGGGCTA AATGGCACGC TGCTGGGTGT CGTGCTGGTT
CACACGGTTC ACGGACTGGT GTTTGCCGTA TGGATTGCCT CGGCGGCGTT CTCGGCGGTG
GGGCGTGAAA TGGAGCAGGC GGCACGATCG ATTGGTGCCG GGCCGTGGCG TGCTTTTGTC
GATATCACTC TGCCGCTGGC TATGCCGGGG CTGATGGCAT CCGCCATTTT TGTTTTCCTC
GAATCGCTGG ATGAGTTTAC CGGCAGCTAT TTCGTGGGAG CACCAGATGT GCAGATGATG
CCGCTGCTGC TTTATACCGC GGGGGCGGGC GGCAACTACC AGATCGCTTC TATTACCGCT
TTGGTGCTGC TGATTCCTTC CGTGCTGTTC ATGCTGGTGG TGGAGCGTTT TTTGAAAGCC
GATGTCATGG CAAGGATAGG GAAATGA
|
|---|
| Protein sequence | MKNVLWWIPR MLILGTLIFL IFGPLANLLL WSVAEKWFYP HLLPNDWGFA FWKRVFSPRG
VAWEALGNSV LVAVFTVLAS LSLAIPAGYA LARLPLPARG LILLIFLIPQ AFPNLTVYVN
IARLFYQWGL NGTLLGVVLV HTVHGLVFAV WIASAAFSAV GREMEQAARS IGAGPWRAFV
DITLPLAMPG LMASAIFVFL ESLDEFTGSY FVGAPDVQMM PLLLYTAGAG GNYQIASITA
LVLLIPSVLF MLVVERFLKA DVMARIGK
|
|---|
| |