| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_71000 |
|---|
| Symbol | |
|---|
| ID | 4385080 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | - |
|---|
| Start bp | 6326330 |
|---|
| End bp | 6327508 |
|---|
| Gene Length | 1179 bp |
|---|
| Protein Length | 392 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639328321 |
|---|
| Product | putative lycine betaine/L-proline ABC transporter, ATP-binding subunit |
|---|
| Protein accession | YP_793850 |
|---|
| Protein GI | 116053523 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4175] ABC-type proline/glycine betaine transport system, ATPase component |
|---|
| TIGRFAM ID | [TIGR01186] glycine betaine/L-proline transport ATP binding subunit
[TIGR03415] choline ABC transporter, ATP-binding protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 55 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 49 |
|---|
| Fosmid unclonability p-value | 0.990652 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACCGCGA TCCGATTCGA CCATGTGGAC GTCATCTTCG GCACCCACAC CAAGGAAGCC
CTGAAGCTCC TCGACCAGGG CCTCGGCCGC GCCGAGATCC TCAAGCGCAC CGGCCAGGTG
CTCGGCGTCG AGGACGCCTG CCTGGACGTC AACCGCGGCG AGATCTGCGT GCTGATGGGA
CTTTCCGGCT CCGGTAAGTC GAGCCTGCTG CGCTGCATCA ACGGCCTGAA CAAGGTCAGC
CGCGGCAAGC TGCTGATCGA GCACGAAGGT TCGCAGGTGG ACATCGCCAA CTGCTCGCCG
GCGACCCTCA AGGCCATGCG CACCAAGCGC ATCGCCATGG TGTTCCAGAA GTTCGCCCTG
ATGCCCTGGC TGACGGTGGC CGAGAACGTC GGCTTCGGCC TGGAAATGCA GGGCCGTCCG
GCCGCCGAGC GGAAGAAGCT GATCGACGAG AAGCTCGAGC TGGTCGGTCT CTCGCAGTGG
CGCGACAAGC GTCCCGACTC GCTCTCCGGC GGCATGCAGC AGCGCGTCGG CCTGGCTCGC
GCGCTGGCGA TGGATGGCGA CATCCTGCTG ATGGACGAAC CGTTCTCCGC CCTCGACCCG
CTGATCCGCC AGCAATTGCA GGACGAACTG CTGGTGCTGC AACGGCAACT GCACAAGACC
ATCGTGTTCG TCAGCCACGA CCTCGACGAG GCGCTGAAGA TCGGCACCCG CATCGCGATC
ATGAAGGACG GCCGGATCAT CCAGCACGGC AAGCCGGAAG AGATCGTGCT GAGCCCCGCG
GACGACTACG TGCGTACCTT CGTCGCCCAT ACCAACCCGC TCAACGTGCT GTGCGGCCAG
AGTCTGATGC GTGGCCTCGA CCAGTGCATC CGGCAGAACG ACGAGATCTG CTTCGACCAG
GGCCGCGACT GCTGGATCGG TCTCAGCGAA GGCGACGTGC TCAAGGGCGC GCGCCAGGGC
AGCAACGTCA TCGACCTGCA ACGCTGGCGC CAGGGCGACC CGGTGGAGAA GCTGCGCCGC
GAACCGACCC TGGTGGATGT CAGCATCCGT ATGCGCGATG CCCTGCAGAT TCGCTACCAG
ACCGGCCACA AGCTGGTTCT GCAGGAGCAG GACAGGGTGG TCGGGGTGCT CGGCGACAGC
GAGCTGTACC ACGCGCTGCT GGGCAAGAAC CTCGGCTGA
|
|---|
| Protein sequence | MTAIRFDHVD VIFGTHTKEA LKLLDQGLGR AEILKRTGQV LGVEDACLDV NRGEICVLMG
LSGSGKSSLL RCINGLNKVS RGKLLIEHEG SQVDIANCSP ATLKAMRTKR IAMVFQKFAL
MPWLTVAENV GFGLEMQGRP AAERKKLIDE KLELVGLSQW RDKRPDSLSG GMQQRVGLAR
ALAMDGDILL MDEPFSALDP LIRQQLQDEL LVLQRQLHKT IVFVSHDLDE ALKIGTRIAI
MKDGRIIQHG KPEEIVLSPA DDYVRTFVAH TNPLNVLCGQ SLMRGLDQCI RQNDEICFDQ
GRDCWIGLSE GDVLKGARQG SNVIDLQRWR QGDPVEKLRR EPTLVDVSIR MRDALQIRYQ
TGHKLVLQEQ DRVVGVLGDS ELYHALLGKN LG
|
|---|
| |