| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_59250 |
|---|
| Symbol | pilN2 |
|---|
| ID | 4382734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5278639 |
|---|
| End bp | 5280276 |
|---|
| Gene Length | 1638 bp |
|---|
| Protein Length | 545 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639327369 |
|---|
| Product | Type IV B pilus protein |
|---|
| Protein accession | YP_792921 |
|---|
| Protein GI | 116052606 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1450] Type II secretory pathway, component PulD |
|---|
| TIGRFAM ID | [TIGR02520] type IVB pilus formation outer membrane protein, R64 PilN family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.0179711 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 0.0000153771 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | GTGAACGAGT CGGCGGATCG TGTCGAAGCT ACGGCAGATT CCGCGTCTAC GATCGCAGCG
CAGGTGCGCA ACACCCGACC GGATCGGCGC GATACGGTGG TGTTCTCCGA CAAACCCTGG
GTCAGCACGA AACCCCTAAG CGTTTCGCAC ACCTTGTCCA GTGACTGCAT CGTGACGTGG
CGCCCTGCAG GCGCAGCGTC GCTGCAGGAG GCCGCCCAGG AAGTCATCAA CCAATGCCAC
ATGGCGGTCA GTATCACGCC CGACGCGCTG AACCCGGCCG CCTTCGCCGT GCAACCTCAG
CAGCGCGCGA GCAACGCCCC GCCGCCCATC CAAGGCGGCC AGGACATGGC CACCATGCTG
TTTCCTGCCT CCGTCGCCAA CGGCATGTCG CTCGGTGCCG GCGGCAGCAT GGGGTCGAGC
TTCGGGTCCT ACGGTCCGCG GTCTCTGTAC AACATCAAAT GGAACGGCAA AGTCAGCGGG
TTCCTCGATC TCATCGCCGC CCGAGCCGGC GTGTCCTGGC GCTACAACCC AACCGAGAAA
AGGGTCGAGT TCTACTACCT GGACACTCGG ACCTTCCGCA TCTACGCCTT CGACGACGTC
AACACGGTGG ACTCCACCGT GCGTTCCGGT ATGACGACGG CCGCCGGCAT CAGCGGGGAC
GGCTCCGGAT CCACCGGACA GAATGGCAGC TCCGGCATCA GCGGCGACTC CGGCAGCAAG
CAGACCACCA GCTCGGAGCT GAAGACATCG ATCCTCAGCG ACATCGAGAA CAGCATCAAC
TCGATGCTGA CGCCGAGCAT GGGACGCATG TCGCTGTCGC GTGCCACGGG CACCCTGACC
GTCACCGACC GTCCAGAAGT CCTCAACCGT GTCCAGCAGT TGGTCAACCG AGAGAACGAG
AGCATCACCA AGCAGGTGCT GCTGAACGTC AACGTGCTCT CGGTCGCCCT GACCGACAAG
GATCAACTGG GGATCGACTG GAACCTGGTC TACAAGTCGC TCAACAACAA GTGGGGCATC
GGCCTGAAGA ACACCATGCC GGGCATCGAT CAAAGCGCGA TCTCCGGCTC CGTGAGCATC
CTGGATACCG CCAACAGCGC CTGGGCAGGA TCCAAGGCCA TGGTCCAGGC GCTGGCCCAG
CAGGGCCGCG TCTCGACCGT CCGATCCCCG TCCGTGACCA CGCTCAACCT CCAGTCGGCG
CCGATCCAGA TCGGCCGCTA CGACAGCTAC CTGGCCTCCA GCCAGATCTC CAACGTCGCC
CAGGTCGGCA GTACCACCTC GCTGATCCCG GGCGCCGTGA CCAGCGGCTA CAACATGAGC
CTGCTGCCGT TCGTGATGGA AAGCGGCGAG ATGCTGCTGA AGATCAACAT CAACATGACC
TCCCGGCCGA CGTTCGAAAT GCAGACCAGC GGGGACTCCA AAGCCCAGTT CCCGAGCTAC
GACATACAAC TGTTCGACCA GAAGGTACGT CTGCGCAGCG GCGAGACCTT GGTACTCTCC
GGCTTCGACC AGACCACCGA GGACACCAAC AAGGTCGGCA CCGGCGACGC TGGGTTCTTC
GGTCTTGGCG GCGGGCTGAC CCGCAATACC AAGCGCGAGG TCATCGTGGT GCTGATCACC
CCCGTCGTGC TGGGCTGA
|
|---|
| Protein sequence | MNESADRVEA TADSASTIAA QVRNTRPDRR DTVVFSDKPW VSTKPLSVSH TLSSDCIVTW
RPAGAASLQE AAQEVINQCH MAVSITPDAL NPAAFAVQPQ QRASNAPPPI QGGQDMATML
FPASVANGMS LGAGGSMGSS FGSYGPRSLY NIKWNGKVSG FLDLIAARAG VSWRYNPTEK
RVEFYYLDTR TFRIYAFDDV NTVDSTVRSG MTTAAGISGD GSGSTGQNGS SGISGDSGSK
QTTSSELKTS ILSDIENSIN SMLTPSMGRM SLSRATGTLT VTDRPEVLNR VQQLVNRENE
SITKQVLLNV NVLSVALTDK DQLGIDWNLV YKSLNNKWGI GLKNTMPGID QSAISGSVSI
LDTANSAWAG SKAMVQALAQ QGRVSTVRSP SVTTLNLQSA PIQIGRYDSY LASSQISNVA
QVGSTTSLIP GAVTSGYNMS LLPFVMESGE MLLKININMT SRPTFEMQTS GDSKAQFPSY
DIQLFDQKVR LRSGETLVLS GFDQTTEDTN KVGTGDAGFF GLGGGLTRNT KREVIVVLIT
PVVLG
|
|---|
| |