| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_56790 |
|---|
| Symbol | |
|---|
| ID | 4382471 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5058011 |
|---|
| End bp | 5060074 |
|---|
| Gene Length | 2064 bp |
|---|
| Protein Length | 687 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639327159 |
|---|
| Product | GGDEF domain/EAL domain-containing protein |
|---|
| Protein accession | YP_792712 |
|---|
| Protein GI | 116052401 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 80 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAACTGG ACTCCCGACA CAGCCTCTCG CTCAAGCTGC TGCGTGTCGT GCTACTGGCG
GCGCTGGCCG TTGGCGTAGT GCTCAGTTGC GCGCAGATCG TCTTCGACGC CTACAAGGCC
AAGCAGGCGG TGAGCAGCGA CGCCCAACGC ATCCTCGCGA TGGTCCGCGA CCCTTCCACC
CAGGCGGTCT ACAGCCTCGA CCGGGAAATG GCGATGCAGG TCCTCGAAGG CCTGTTCCAG
CACGAGGCGG TGCGCCAGGC GAGCATCGGC CATCCCGGCG AGCCGATGCT GGCGGAGAAA
TCCAGGCCGC TGCTGGACCT GCCGACGCGC TGGCTGACCG ACCCGATCCT CGGCCAGGAA
CGCACCTTCA GCATTCGACT GATCGGCCGC CCGCCCTATA GCGAATACTA CGGCGACCTG
AAGATCACCC TGGACACCGC GCCCTACGGC GAGAACTTCG TCACCACTTC GGAAATCATC
TTCATCTCCG GCATTCTCCG CGCCCTGGCC ATGGGCCTGG TGCTGTTCCT GGTCTACCAC
TGGATGCTGA CCAAACCGCT GTCGAAGATC ATCGAGCACC TGGTCAGCAT CAATCCCGAC
CGCCCCAGCC AGCACCAGTT GCCGCTGCTC AAGGGGCACG AACGCAACGA GCTGGGGCTC
TGGGTGACCA CCGCCAACCA GTTGCTCGCC TCGATCGAAA GCAACAGCCA CCTGCGCCGC
GAGGCCGAAG ACAACCTGCT GCGCATTTCC CAGTACGACT TCCTCACCGG CCTGCCGAAC
CGCCAGTTGC TGCAACAGCA ACTCGACCAG ATCCTCGACG GCGCCGGCCG CCAGCAGCGC
CGGGTAGCAG TGCTGTGCCT GGGCCTCGAC GATTTCAAGG GGATCAACGA GCAGTACACC
TACCAGCTCG GCGACCAGTT GCTGATCGCC CTCGCCGACC GCCTGCGCGG GCACAGCGCG
CGGCTCGGTT CGCTGGCGCG CCTGGGCGGC GACCAGTTCG CCCTGGTCCA GGCCGACATC
GAGCAACCCT ACGAGGCGGC CGAACTGGCG CAGAGCATCC TCGACGGCCT GGAAGCGCCG
TTCGAGATCG ACCAGCACGA GGTGCGCCTG CGCGCCACCA TCGGTATCAC CCTGTTCCCC
GAGGACGGCG AGACCACGGA GAAACTGCTG CAGAAGGCCG AGCAGACCAT GACCCTGGCC
AAGACCCGCT CGCGCAACCG CTACCAGTTC TACATCGCCA GCGTGGACAG CGAGATGCGT
CGCCGCCGGG AACTGGAAAA GGACCTGCGC GACGCCCTGC AGCGCCACGA GCTGCACCTC
GTCTACCAGC CGCAGGTGGA CTACCGCGAC CACCGCGTGG TCGGCGTCGA GGCACTGCTG
CGCTGGCAAC ATCCGTTGCA CGGCTTCGTC CCGCCGGACC TGTTCATCCC GCTGGCGGAA
CAGAACGGCA GCATCTTCAG CATCGGCGAG TGGGTGCTCG ACCAGGCCTG CCGGCAATTG
CGCGAATGGC ACGACCAGGG CTTCGACGAC CTGCGCATGG CGGTCAATCT TTCCACCGTG
CAGCTCCACC ACAACGCCCT GCCACGGGTG GTCAGCAACC TGCTGCAGGT CTACCGCCTG
CCGGCGCGCA GCCTGGAGCT GGAAGTCACC GAGACCGGCC TGATGGAGGA CATCTCCACT
GCCGCCCAGC ACCTCCTCAG CCTGCGCCGC GCCGGCGCGC TGATCGCCAT CGACGATTTC
GGCACCGGCT ATTCCTCGCT GAGCTACCTG AAGAGCCTGC CGCTGGACAA GATCAAGATC
GACAAGAGTT TCGTCCAGGA CCTGCTGCAG GACGAGGACG ACGCGACCAT CGTTCGCGCC
ATCATCCAGC TCGGCAAGAG CCTGGGCATG CAGGTGATCG CCGAGGGCGT GGAAACCGCC
GAGCAGGAGG CGTACATCAT CGCCGAAGGT TGCAACGAAG GTCAGGGCTA CCTGTACAGC
AAGCCGCTGC CGGCCAGGGA ACTGACCCAG TACCTCAAGC AGGCGCGACG CCTGAGCCAG
GCCACCAGCA GCGAACGGCC CTGA
|
|---|
| Protein sequence | MKLDSRHSLS LKLLRVVLLA ALAVGVVLSC AQIVFDAYKA KQAVSSDAQR ILAMVRDPST
QAVYSLDREM AMQVLEGLFQ HEAVRQASIG HPGEPMLAEK SRPLLDLPTR WLTDPILGQE
RTFSIRLIGR PPYSEYYGDL KITLDTAPYG ENFVTTSEII FISGILRALA MGLVLFLVYH
WMLTKPLSKI IEHLVSINPD RPSQHQLPLL KGHERNELGL WVTTANQLLA SIESNSHLRR
EAEDNLLRIS QYDFLTGLPN RQLLQQQLDQ ILDGAGRQQR RVAVLCLGLD DFKGINEQYT
YQLGDQLLIA LADRLRGHSA RLGSLARLGG DQFALVQADI EQPYEAAELA QSILDGLEAP
FEIDQHEVRL RATIGITLFP EDGETTEKLL QKAEQTMTLA KTRSRNRYQF YIASVDSEMR
RRRELEKDLR DALQRHELHL VYQPQVDYRD HRVVGVEALL RWQHPLHGFV PPDLFIPLAE
QNGSIFSIGE WVLDQACRQL REWHDQGFDD LRMAVNLSTV QLHHNALPRV VSNLLQVYRL
PARSLELEVT ETGLMEDIST AAQHLLSLRR AGALIAIDDF GTGYSSLSYL KSLPLDKIKI
DKSFVQDLLQ DEDDATIVRA IIQLGKSLGM QVIAEGVETA EQEAYIIAEG CNEGQGYLYS
KPLPARELTQ YLKQARRLSQ ATSSERP
|
|---|
| |