| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_42340 |
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| Symbol | pscD |
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| ID | 4380353 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 3772204 |
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| End bp | 3773502 |
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| Gene Length | 1299 bp |
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| Protein Length | 432 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639325963 |
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| Product | type III export protein PscD |
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| Protein accession | YP_791528 |
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| Protein GI | 116049667 |
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| COG category | |
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| COG ID | |
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| TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
| Num covering plasmid clones | 34 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 72 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCTGGA AGATCCGCTT CTACAGCGGG CTGAACCAGG GCGCCGAAGT CTCGCTCGGA
GAGGGCCGGG TGGCGCTTGG CAGCGATCCG TTGCAGGCCG ACCTGGTGTT GCTCGACGAG
GGCATCGCGG CAGTCCACCT GGTGCTCGAG GTCGATGCCC AGGGCGTGCG CCTGCTGGAG
TGGGCGGAGG GCTGCGAGCC TCGCCAGGAC GGCCAGGCGC AAGTCGCCGG AGCGATCCTG
CAGGCGCTTG CCGGGCAGAC CTGCGGCCCG CTGCGCTGGG CATTCTGCGA CCCGCAGCGG
AGTTTTCCCG AGCGTTTCCC CGAAGTCGAG GCGCAGACCG CGCCAGTGCG CCGCAAGCCG
TCCGCCCGTG CCGGCGGGGC CTGGCTGCTC GGCATCAGCC TGGCGCTGGC CCTGTGCCTG
CTGGGCATGC TCGTCGAACC CTGGTCGGCC CGCCAGCACG GCATGGCCGG CGAGGAGCCC
CTGGCGAGGG TGCGCGCCTA CCTGCGCGAG CAGGGCATGA GCGAGGTGGA TGTGCAGCGC
CAGGGCGACA GTCTCCTGCT CGGCGGCTAC CTGGAGGACA ACGCCCGGCG CCTGGCGCTG
CAGCGCTACC TCGATGGCAG CGGCGTGGAC TACCGACTGG AAGCACGGAG CATGGAAGAC
ATTCGCCAGG GCGTGGATTT CATCCTGCAG AAATTCGGCT ATCGGCAGAT CCTCAGCAGC
AACGCGGACA AGCCTGGCTG GGTCCGGCTC AACGGCGAAC TGGCGGAACA GGACGAACGC
TGGGCGCGGA TCGACGCATT GCTGGAGTCC GAGGTGCCGG GCCTGCTCGG GGTGGAAAAC
CAGGTCCGGG TGGCCGGCTC GCACCTGCGC CGCCTCGAAC GCCTGCTGGC GGACGCCGGC
CTCGACCGGC AACTGAGTTT CCGCGAGCGC GGCGAGCGCA TCGAGTTGAG CGGTACGCTC
GACGAGGTCC AGCTCAGCGC CTTCTACCGC CTGCAGCGCG AGTTCCAGCA GGAGTTCGGC
AACCGCCCGA GCCTGGAGCT GCTCAGTCGC GGCAAGCGCG CCAGCGGCGA CGAACTGGAG
TTCACGGTGC GCTCGGTGTC GCTGGGGCGG GTGCCCTATG TAGTGCTCGG CGACGGCCAG
AAATACCCGG TGGGCGCCTC GACATCCCGT GGTGTGCGAA TCCTCGCCAT CGAGCCGGAG
TCGATCCTGG TGGCCCGCGG CAAGCAGCGT TTCATCATCA ATCTCAAAGG GGAGGTGCTC
CATGATGACA GCCTTGGAAA CGCGACTGTC GGTCGCTGA
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| Protein sequence | MAWKIRFYSG LNQGAEVSLG EGRVALGSDP LQADLVLLDE GIAAVHLVLE VDAQGVRLLE
WAEGCEPRQD GQAQVAGAIL QALAGQTCGP LRWAFCDPQR SFPERFPEVE AQTAPVRRKP
SARAGGAWLL GISLALALCL LGMLVEPWSA RQHGMAGEEP LARVRAYLRE QGMSEVDVQR
QGDSLLLGGY LEDNARRLAL QRYLDGSGVD YRLEARSMED IRQGVDFILQ KFGYRQILSS
NADKPGWVRL NGELAEQDER WARIDALLES EVPGLLGVEN QVRVAGSHLR RLERLLADAG
LDRQLSFRER GERIELSGTL DEVQLSAFYR LQREFQQEFG NRPSLELLSR GKRASGDELE
FTVRSVSLGR VPYVVLGDGQ KYPVGASTSR GVRILAIEPE SILVARGKQR FIINLKGEVL
HDDSLGNATV GR
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