Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_42340 |
Symbol | pscD |
ID | 4380353 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 3772204 |
End bp | 3773502 |
Gene Length | 1299 bp |
Protein Length | 432 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639325963 |
Product | type III export protein PscD |
Protein accession | YP_791528 |
Protein GI | 116049667 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR02500] type III secretion apparatus protein, YscD/HrpQ family |
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Plasmid Coverage information |
Num covering plasmid clones | 34 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 72 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCCTGGA AGATCCGCTT CTACAGCGGG CTGAACCAGG GCGCCGAAGT CTCGCTCGGA GAGGGCCGGG TGGCGCTTGG CAGCGATCCG TTGCAGGCCG ACCTGGTGTT GCTCGACGAG GGCATCGCGG CAGTCCACCT GGTGCTCGAG GTCGATGCCC AGGGCGTGCG CCTGCTGGAG TGGGCGGAGG GCTGCGAGCC TCGCCAGGAC GGCCAGGCGC AAGTCGCCGG AGCGATCCTG CAGGCGCTTG CCGGGCAGAC CTGCGGCCCG CTGCGCTGGG CATTCTGCGA CCCGCAGCGG AGTTTTCCCG AGCGTTTCCC CGAAGTCGAG GCGCAGACCG CGCCAGTGCG CCGCAAGCCG TCCGCCCGTG CCGGCGGGGC CTGGCTGCTC GGCATCAGCC TGGCGCTGGC CCTGTGCCTG CTGGGCATGC TCGTCGAACC CTGGTCGGCC CGCCAGCACG GCATGGCCGG CGAGGAGCCC CTGGCGAGGG TGCGCGCCTA CCTGCGCGAG CAGGGCATGA GCGAGGTGGA TGTGCAGCGC CAGGGCGACA GTCTCCTGCT CGGCGGCTAC CTGGAGGACA ACGCCCGGCG CCTGGCGCTG CAGCGCTACC TCGATGGCAG CGGCGTGGAC TACCGACTGG AAGCACGGAG CATGGAAGAC ATTCGCCAGG GCGTGGATTT CATCCTGCAG AAATTCGGCT ATCGGCAGAT CCTCAGCAGC AACGCGGACA AGCCTGGCTG GGTCCGGCTC AACGGCGAAC TGGCGGAACA GGACGAACGC TGGGCGCGGA TCGACGCATT GCTGGAGTCC GAGGTGCCGG GCCTGCTCGG GGTGGAAAAC CAGGTCCGGG TGGCCGGCTC GCACCTGCGC CGCCTCGAAC GCCTGCTGGC GGACGCCGGC CTCGACCGGC AACTGAGTTT CCGCGAGCGC GGCGAGCGCA TCGAGTTGAG CGGTACGCTC GACGAGGTCC AGCTCAGCGC CTTCTACCGC CTGCAGCGCG AGTTCCAGCA GGAGTTCGGC AACCGCCCGA GCCTGGAGCT GCTCAGTCGC GGCAAGCGCG CCAGCGGCGA CGAACTGGAG TTCACGGTGC GCTCGGTGTC GCTGGGGCGG GTGCCCTATG TAGTGCTCGG CGACGGCCAG AAATACCCGG TGGGCGCCTC GACATCCCGT GGTGTGCGAA TCCTCGCCAT CGAGCCGGAG TCGATCCTGG TGGCCCGCGG CAAGCAGCGT TTCATCATCA ATCTCAAAGG GGAGGTGCTC CATGATGACA GCCTTGGAAA CGCGACTGTC GGTCGCTGA
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Protein sequence | MAWKIRFYSG LNQGAEVSLG EGRVALGSDP LQADLVLLDE GIAAVHLVLE VDAQGVRLLE WAEGCEPRQD GQAQVAGAIL QALAGQTCGP LRWAFCDPQR SFPERFPEVE AQTAPVRRKP SARAGGAWLL GISLALALCL LGMLVEPWSA RQHGMAGEEP LARVRAYLRE QGMSEVDVQR QGDSLLLGGY LEDNARRLAL QRYLDGSGVD YRLEARSMED IRQGVDFILQ KFGYRQILSS NADKPGWVRL NGELAEQDER WARIDALLES EVPGLLGVEN QVRVAGSHLR RLERLLADAG LDRQLSFRER GERIELSGTL DEVQLSAFYR LQREFQQEFG NRPSLELLSR GKRASGDELE FTVRSVSLGR VPYVVLGDGQ KYPVGASTSR GVRILAIEPE SILVARGKQR FIINLKGEVL HDDSLGNATV GR
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