| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_41540 |
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| Symbol | nirD |
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| ID | 4382885 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 3708550 |
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| End bp | 3708876 |
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| Gene Length | 327 bp |
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| Protein Length | 108 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 639325900 |
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| Product | assimilatory nitrite reductase small subunit |
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| Protein accession | YP_791465 |
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| Protein GI | 116049728 |
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| COG category | [P] Inorganic ion transport and metabolism
[R] General function prediction only |
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| COG ID | [COG2146] Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases |
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| TIGRFAM ID | [TIGR02378] nitrite reductase [NAD(P)H], small subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 35 |
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| Plasmid unclonability p-value | 0.369116 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 69 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGAACTGGC TGGATATCTG CGCCCTCGAT GAAATCAACC CGCTGGGCTC GCGCGTGGTC
GCCGGCCCGA AAGGCGACAT CGCCATCTTC CGCGCCTCCG ACGACCAGGT CTTCGCCCTC
GATGACCGCT GCCCGCACAA GGGCGGCCCG CTGTCCCAGG GCCTGATCTA CGGCAAGCGA
GTGGCCTGTC CGTTGCACAA CTGGCAGATC GAACTGGAGA GCGGCGAAGC CGTGGCCCCG
GACCAGGGCT GCGCCCATCG CCACCCGGTG CGGGTGGAGA ACGGACGGGT GCTGCTCGGC
CTGGACAGCG TGGCGCTGTG CGCCTGA
|
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| Protein sequence | MNWLDICALD EINPLGSRVV AGPKGDIAIF RASDDQVFAL DDRCPHKGGP LSQGLIYGKR
VACPLHNWQI ELESGEAVAP DQGCAHRHPV RVENGRVLLG LDSVALCA
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