Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_21050 |
Symbol | |
ID | 4385436 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 1819004 |
End bp | 1820782 |
Gene Length | 1779 bp |
Protein Length | 592 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 639324241 |
Product | short chain dehydrogenase |
Protein accession | YP_789828 |
Protein GI | 116051339 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities [COG0596] Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 60 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGCGC TCCTCGCCCT CCCCGACCTG CAGCCGGAAC GGCTGTTCGT GCAGTCCGGC GACGTGCGCC TGGCGGTTCA TTGCTGGGGC GCGCCGGACA ACGACAAGCC GACGCTGCTG ATGGTGCATG GCTACCCGGA CAACCACGAG ACCTGGCTGC CGCTGATCCG CCAACTGGCT GGGCGCTACC GCATCGTCGC CTACGACGTG CGCGGCGCCG GCGCTTCGGA CAAGCCACGC TGGAGCCGCG ACTACCACCT GCAACGGCTC AGCGAAGACC TGCAGGCGGT GATTCGCGCC ACCAGCCCGG ATCGCCCGGT GCACCTGCTG GCCCATGACT GGGGCTCGAT CCAGACCTGG GAAAGCGTCA CCGATCCGCA GTGCCGCCCG CTGATCGCGT CCTATACCTC GATCTCCGGG CCCTGCCTGG ACCATGTCGG CTTCTGGATG CGCGAACACC TCAGGCAGCG CAGTCCGAAG GCCCTGAAAG CGGTATTCGG CCAGTTGCTC CACTCCTGGT ACATCGCCTT CTTCCATACC CCCGTCGTAC CCGAGCTGCT CTGGAGCGTC GGCCTGGCCC GGCTCTGGCC GCAGTTCTTG AAGCGCGCCG AAGGCGTCCG CCATCCACAG GTCAACCCGA CCCAGGCCAG CGACGGCCGG CACGGGGTCA AGCTGTACCG CGGCAACTTC ATCCGCAGCC TGTTCCGTCC GCGCAAGCGC CACACCGAAG TGCCGGTGCA ACTGATCGTA CCGACCCGCG ACCGTTACGT CGGCGCCCAG CTGTTCCAGC ACCTCAGCCT GTGGGCGCCA CGCCTGTGGC GGCGCGAGGC GAGCGTCGGC CATTGGCAAC TGCTGGCCGA GCCGGAGCAA CTGGCCGGCT GGCTTGGCGA GTTCATCGAC GCCCAGGAAA CCGGCGAGTC GCCGCCGGCC CTGCAACGCG CACAGGTCCG CCCCGACGCG CGCTCGATGA GCGGCAAGCT GGTGGTGGTC ACCGGCGCCG GCGGCGGCAT CGGCCGTTCG ACCCTGCTCA GCTTCGCCGA GCGCGGCGCC AGCCTGCTCG CCGCCGATCT CGACCTGGAA GCCGCCGAAC GCAGCGCCGA ACTGGCCCGC GCCCTTGGCG CCACGGCCCA TGCCTACCAG GTCGACGTCG GCGATACCCA GGCCATGGAG CGCTTCGCCG AGTGGGTCCG CGACACCCTC GGAGTCCCGG ATGTGGTGGT CAGCAATGCC GGCATCGGCA TGGCCGGACC GATGCTCGAC ACCTCGCCCG CGGAATGGGA GCGCCTGCTG CGGGTCAACC TGTGGAGCGT GATCGACGGC TGCCGCCTGT TCGGCCGGCA GATGATCGCG GCGAACAAGC CGGGGCACCT GGTCAATGTC GCCTCCGGCG TGGCCTTCGC GCCGTCGCGC AACTACCCCG CCTACGCCAC CAGCAAGGCC GCGGTACTGA TGCTCAGCGA ATGCCTGCGG GCGGAACTGG CCGGACGTTC GATCGGAGTC ACCGCGGTGT GCCCGGGCTT CGTCGATACC GGCATCGTCC AGGCCACCCG CTTCGTCGGC ATGGACGCCG AACGCCAGGC GCGGCGCCAG GCGAAGATCC AGCGCTTCTA CAAGCGACGC CGGCTCAGCC CGGACACCGT TGGGGAAAAG CTGGTGCGCG CCGTGGAGCG CAACAAGGCG GTGGTCTCGG TGGGCAGCGA GGTGCACCTC GGCGCCCTGC AATGGCGCTT CGCGCCCTGG GCCACGCGGT TTCTCGCGCG CTTCGACCTG ACTTCCTGA
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Protein sequence | MNALLALPDL QPERLFVQSG DVRLAVHCWG APDNDKPTLL MVHGYPDNHE TWLPLIRQLA GRYRIVAYDV RGAGASDKPR WSRDYHLQRL SEDLQAVIRA TSPDRPVHLL AHDWGSIQTW ESVTDPQCRP LIASYTSISG PCLDHVGFWM REHLRQRSPK ALKAVFGQLL HSWYIAFFHT PVVPELLWSV GLARLWPQFL KRAEGVRHPQ VNPTQASDGR HGVKLYRGNF IRSLFRPRKR HTEVPVQLIV PTRDRYVGAQ LFQHLSLWAP RLWRREASVG HWQLLAEPEQ LAGWLGEFID AQETGESPPA LQRAQVRPDA RSMSGKLVVV TGAGGGIGRS TLLSFAERGA SLLAADLDLE AAERSAELAR ALGATAHAYQ VDVGDTQAME RFAEWVRDTL GVPDVVVSNA GIGMAGPMLD TSPAEWERLL RVNLWSVIDG CRLFGRQMIA ANKPGHLVNV ASGVAFAPSR NYPAYATSKA AVLMLSECLR AELAGRSIGV TAVCPGFVDT GIVQATRFVG MDAERQARRQ AKIQRFYKRR RLSPDTVGEK LVRAVERNKA VVSVGSEVHL GALQWRFAPW ATRFLARFDL TS
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