| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_20620 |
|---|
| Symbol | |
|---|
| ID | 4382273 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 1774674 |
|---|
| End bp | 1775732 |
|---|
| Gene Length | 1059 bp |
|---|
| Protein Length | 352 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 639324205 |
|---|
| Product | HlyD family secretion protein |
|---|
| Protein accession | YP_789792 |
|---|
| Protein GI | 116051375 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG1566] Multidrug resistance efflux pump |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.0045141 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 48 |
|---|
| Fosmid unclonability p-value | 0.878507 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACTCCCG ATCAACGATT TGCCCGTTGG GTTCAAGTCG CTATCGCGGT ATTCGTGTTG
CTGTTCGTCT ACTTCCTGGT CGCCGACCTG TGGATGCCGC TCACCCCGCA GGCCCAGTTG
ACCCGGCCGG TGGTGCGCGT CGCGCCGCGT GTCAGCGGTC AGGTCGCCGA GGTGCTGGTG
TCCAACAACG GCCACGTGCA GCCCGGCGAA GTGTTGTTCC GCCTCGATCC AGAGCCGTTC
CAACTGGCCG TGCGCCAGGC CGAACTGGCA CTGGAGGAAG CCGAGCGCAC CAACCGCGAG
CTGGATGCCG CCATCGCCTC GGCCAAGGCC GACCTCCTGG CCGCGCGCAG CAGCGCCGGC
GAGCTGGACA GCGAGGCGCG CCGCACCGCC CAACTGGTGC AGCGCCACCA TGTGTCGCAG
CAGATGCACG AGCAGGTCAG CGCCCAGGCC CAGGCCGCCC GTGCCCGGGT CGCCGCGGCC
CAGGCGCGGA TCGGCGAGCT GACCGCGCGA CGCGGCACGG CCGGCGAGGA CAACCTGCGC
CTGCGCCAGG CGCGTAACGC CCTGGCCCAG GCCCGTCTGC AACTGCAATA CAGCAGCGTC
CGGGCCGACC GCGCCGGGAC CCTGAGCAAC CTGCAACTGA CCCCGGGCAC CTACGTTCCG
GCCGGTACGC CGGTGGCGGC GCTGGTGGAC GACCGCATCG ACATCGTCGC CGACTTCCGC
GAGAAATCGC TGCGCTACGT GCGCCCTGGC GACCGTGCGG CGGTGGTGTT CGATGCGCGT
CCCGGCGAAG TGTTCGGCGC GCGGGTGGCG GCCATCGACG CCGGGGTCAA GGAGGGCCAG
CTGGACGCCA ACGGCGACCT CGCCGCGCCG GTCACCTCCG ACCGCTGGGT CCGCGACGCT
CAGCGCCAGC GCCTGCACGT GGTGCTCGAC GAACTTCCCG AAGGCTTCCT GCCCACCGGT
GCCAAGGCCA CCGTGCAGCT GTATCCCGGC GACGGCCTGA GCCACCTGCT CGGTCGCGCG
CAGATCGTCG CCATCAGCCT GCTGCACTAC GTCTACTGA
|
|---|
| Protein sequence | MTPDQRFARW VQVAIAVFVL LFVYFLVADL WMPLTPQAQL TRPVVRVAPR VSGQVAEVLV
SNNGHVQPGE VLFRLDPEPF QLAVRQAELA LEEAERTNRE LDAAIASAKA DLLAARSSAG
ELDSEARRTA QLVQRHHVSQ QMHEQVSAQA QAARARVAAA QARIGELTAR RGTAGEDNLR
LRQARNALAQ ARLQLQYSSV RADRAGTLSN LQLTPGTYVP AGTPVAALVD DRIDIVADFR
EKSLRYVRPG DRAAVVFDAR PGEVFGARVA AIDAGVKEGQ LDANGDLAAP VTSDRWVRDA
QRQRLHVVLD ELPEGFLPTG AKATVQLYPG DGLSHLLGRA QIVAISLLHY VY
|
|---|
| |