| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_08390 |
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| Symbol | speD |
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| ID | 4383979 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 718670 |
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| End bp | 719464 |
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| Gene Length | 795 bp |
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| Protein Length | 264 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 639323226 |
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| Product | S-adenosylmethionine decarboxylase |
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| Protein accession | YP_788824 |
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| Protein GI | 116054379 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1586] S-adenosylmethionine decarboxylase |
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| TIGRFAM ID | [TIGR03331] S-adenosylmethionine decarboxylase proenzyme, Escherichia coli form |
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Plasmid Coverage information |
| Num covering plasmid clones | 74 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 0.000000233299 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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| |
Sequence |
| Gene sequence | GTGAAAAGCA AACTCAAGCT CCACGGGTTC AACAACCTGA CGAAGACCTT GAGCTTCAAC
ATCTACGACA TCTGCTACGC CGAGACGCCC GAAGACCTCC AGGCCTACGT GCAGTACATC
GACGAAGAGT ATGACGCGGA GCGTCTGACG CAGATTCTTA CCGATGTTGT CGACATCATC
GGCGCCAATA TCCTGAACAT CGCGCGTCAG GACTACGACC CCCAGGGCGC CAGCGTGACC
ATCCTGATCT CCGAGCAGCC GGTCACTCCG ACCGACAGCC AGATCGAAGA GTCCCCGGGC
CCGCTGCCGG ACACCATCCT GGCGCACCTG GACAAGAGCC ACATCACCGT GCATACCTAC
CCGGAAATCC ATCCGGTGGA CGGCATCGCG ACCTTCCGCG TGGACATCGA TGTGTCCACC
TGCGGAGTGA TCTCCCCGCT GAAGGCCCTG AACTACCTGA TCCACCAGTT CGACTCGGAC
ATCGTCACGG TCGACTATCG GGTCCGCGGC TTCACCCGCG ACATTGAGGG GCGCAAGCAT
TTCATCGACC ACGAGATCAA CTCGATCCAG AACTATCTCT CCGACGACAC GCGCGAGGCC
TACCAGATGA CCGACGTGAA CGTGTACCAG GAGAACCTGT TCCACACCAA GATGCTGCTC
AAGGACTTCG AACTGGAGAA CTACCTGTTC GGCGACGCTA CCCGGACGCT CTCGACGGAG
CAGCGCGAGC AGGTCACGGA ACGGCTCAAG CACGAAATGC TGGAGATCTT CTACGCGCGC
AACATGCCGC GCTGA
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| Protein sequence | MKSKLKLHGF NNLTKTLSFN IYDICYAETP EDLQAYVQYI DEEYDAERLT QILTDVVDII
GANILNIARQ DYDPQGASVT ILISEQPVTP TDSQIEESPG PLPDTILAHL DKSHITVHTY
PEIHPVDGIA TFRVDIDVST CGVISPLKAL NYLIHQFDSD IVTVDYRVRG FTRDIEGRKH
FIDHEINSIQ NYLSDDTREA YQMTDVNVYQ ENLFHTKMLL KDFELENYLF GDATRTLSTE
QREQVTERLK HEMLEIFYAR NMPR
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