| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9515_10001 |
|---|
| Symbol | gadB |
|---|
| ID | 4719148 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9515 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008817 |
|---|
| Strand | - |
|---|
| Start bp | 894303 |
|---|
| End bp | 895685 |
|---|
| Gene Length | 1383 bp |
|---|
| Protein Length | 460 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 31% |
|---|
| IMG OID | 640080680 |
|---|
| Product | pyridoxal-dependent decarboxylase family protein |
|---|
| Protein accession | YP_001011314 |
|---|
| Protein GI | 123966233 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0076] Glutamate decarboxylase and related PLP-dependent proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.450995 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTGTAG ATTCAATTAA TAAAAAAGAA AAACTATTCC CTACATATTC AGGAAGTAAC
GATAGTTTTA TTGCTCTTCT CAATAAAACC TCCAAAGTTA TTTGCAATTG GTTTTCAAAT
GCTGAAAAAT TAGGCCCTTT ACCAATAGAT AATAATTTCA AGTGTTCAGT TCCAGATGAA
ACTGGAAAGT CAACAGATGT ATTATTCTCT GAGATTGAAA GTCTCATTTA TAGCTCTTTT
AATCCAGTAC ACCCAGGATC ACTAGCACAC CTCGATCCCC CACCTCTGAT TATCTCTATT
TTGGGAGATT TAATAGCTGC TAGCTTAAAT AATAATCTTC TCGCACATGA ACTATCACCA
AGTATTTCTC TTCTTGAGGA ATCAATTTGT AAATGGTTCT CAAAAAAAAT TGGCTTTACT
GAATCTTCTG GAGGGATAGC AGCAAGCGGT GGGACTTTAA GTAATTTAAA TGCATTAGTG
GCCGCACGGA ATCAAGCTGG ACTTGCATCA GATCATAACG CTGTTTTTTT AATTAGTGAA
GATGCCCATT CATCATTCAT AAAATGTACC TTAATTATGG GTTTAGACAA AAACAATCTA
ATAAAGGTCA AAACAGATAA TGATGGTTGT ATGGATATTA TTGATCTCAA AAAGATTATT
GATAAATGTT ATAGGGAAGG TAAAAAAATA TTTTCCATAG TTGCTACTCT TGGCACAACA
ATACGTGGAG CAATAGATCC TATTGAGAAG ATAAGCAGAA TTTGTAAAGA GAGAAATATT
TGGCTACATA TTGATGGTTC TATTGGTGGT ATTTTTGCGA TTACTAAAAT CCCAATTAAT
GGAATTAGTC ATGTTAATTT TGCTAATTCA ATAACTATTA ATCCTCAGAA AATTCTTGGG
ATTGCAAAAA CTTCATCTAT ATTATTAGTC TCAGATATAG AAGTACTTAA GAATACCTTT
GCTACAGGAT TACCTTATAT TTCTTCTGAA GATAATTTTT TAAATAGAGG TGAACTTGGA
ATTCAAGGAT CTAGACCTGC TGAAATTATA AAACTTTGGT TAGGTTTAAG ATATCTTGGA
ATGAAAGGCA TAGAGGATGT CTTAAGTTCG TCCATTGAGA AAAGGAAATT TTTTGAAGAT
AATTTAAGTA AAGAACAATA TGAATTATGT TCAGGTCCCT TGCATATAGT TTCATTTCTA
CCAAAAAGTA TGAATAAAAA TGAATCAGAT GCATGGACTT TAGATAAAAG AATAAGTCTT
ATGAAAAATA ATTTTATGCT TTCTAGACCT CTTATTAAAA ATAGATATTT TTTAAGAGCA
GTGTTAGGGA ATTTCAATAC TGATAGAACT CATATCAAAG AACTCTTGAA ATTACTTCAT
TAA
|
|---|
| Protein sequence | MTVDSINKKE KLFPTYSGSN DSFIALLNKT SKVICNWFSN AEKLGPLPID NNFKCSVPDE
TGKSTDVLFS EIESLIYSSF NPVHPGSLAH LDPPPLIISI LGDLIAASLN NNLLAHELSP
SISLLEESIC KWFSKKIGFT ESSGGIAASG GTLSNLNALV AARNQAGLAS DHNAVFLISE
DAHSSFIKCT LIMGLDKNNL IKVKTDNDGC MDIIDLKKII DKCYREGKKI FSIVATLGTT
IRGAIDPIEK ISRICKERNI WLHIDGSIGG IFAITKIPIN GISHVNFANS ITINPQKILG
IAKTSSILLV SDIEVLKNTF ATGLPYISSE DNFLNRGELG IQGSRPAEII KLWLGLRYLG
MKGIEDVLSS SIEKRKFFED NLSKEQYELC SGPLHIVSFL PKSMNKNESD AWTLDKRISL
MKNNFMLSRP LIKNRYFLRA VLGNFNTDRT HIKELLKLLH
|
|---|
| |