| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9303_02411 |
|---|
| Symbol | hrpB |
|---|
| ID | 4778070 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9303 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008820 |
|---|
| Strand | - |
|---|
| Start bp | 255193 |
|---|
| End bp | 257754 |
|---|
| Gene Length | 2562 bp |
|---|
| Protein Length | 853 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 57% |
|---|
| IMG OID | 640085745 |
|---|
| Product | DEAD/DEAH box helicase domain-containing protein |
|---|
| Protein accession | YP_001016261 |
|---|
| Protein GI | 124021954 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG1643] HrpA-like helicases |
|---|
| TIGRFAM ID | [TIGR01970] ATP-dependent helicase HrpB |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGAGATC TCCCGATCGA CTCGCTGCTA ACGCAGCTCT GCCACAGCCT TACTGCAAGT
GCCACAGTGC TGCTGCAAGC GCCACCAGGG GCAGGGAAAA CCACCAGAGT TCCGCTTGCG
CTTATGGGTG CCCTTGATGG TCACACCCCT CTTCCAGGCC GAATCTGGAT GCTGGAACCC
CGACGATTAG CTGTCAAAGC AGCAGCCTCG CGACTAGCCG CAAGCTTGAA AGAGCCATTA
GGGGAGCGCG TGGGCTTCGC TATACGACAT GAACAGCTGC GCTCAAAACG AACTCAATTA
GAGGTCATTA CAGACGGCTT GTTTCTACGT CGCCTTCAGA GTGATCCAAG CCTAAACGGC
ATTGATTGCG TAATCTTTGA TGAATTTCAC GAACGACGGC GAGACAGCGA CCTCGCCCTG
GCCCTGTTGC TTGAAGCCCG ACCGCTGCTC CATCCAGAGC TACGGCTTCT GCTCATGTCT
GCAACTCTCA ATCTTGGCGA GTTACAAGAT CGCCTACCAG AAGCAACCCT TCTACAGAGC
GAGGGGAAAG CCTTCCCCGT CGCCACCCAT CATCAAACAC CCCGCCCAGA CGAACCGTTA
CCCCATCAGG TGATGCGGGC CATTAAGGCC CATGCCCTAC CTCTCACCGA AGCAAGCGAT
CGCACCAGTT CACGCCCCAC CGTGCTGGTG TTCCTGCCTG GACAACGTGA GATCAAACGC
ACCCAAGAAC TACTGGCGGC TCAAGAAAGT CTTACGCATT GGAATCTTGC CTATCTTCAC
GGGCAACAGC CTCTGCATGT GCAAGCGCGT GCATTGCTGG GGGCTGAATC GCCTTGGATA
GGCAAGATCG TCTTAGCAAG TTCTATCGCG GAGAGCTCAC TCACCCTCGA AGGGGTTCGA
CTGGTCATCG ACAGCGGCCT GAGTCGGCAA AGTCGCTTTG ACCCCAACAC TGGCATGGAG
GGGCTTGAGA CAGTGCCATC CAGCCTGGCA AGCGCTAATC AACGCCAAGG GCGAGCCGGA
CGCCAAAGTC CAGGCCAATG CGTTCGACTT TGGTCGCTAG CAGAACAACT GCGCAAGCCC
GAACATGCCC CTCCAGAAGT ACTTGTTGCC GATCCCATGC CCGTGGTGCT TGAGCTCGCG
GCCTGGGGCG CTGGCTTAGG AGAAACCCTG CCATGGATCG ACCCCCCACC TCAATCAGCG
TTGCAGAAGG GAAGGCAACA ACTGATCAAT CTGAACGCCC TCAAACATGA CGGACGGATC
ACAACGCTAG GCCGCCATCT CTGCAAACTA GGCATACACC CCAGGCTAGG GATCCTGTTG
CTCCAAGCCA AAGGATGGGG ATGCGCAGCC CTGGGAGCCG AACTAGCCGC TTTACTTGGT
GATCGAGATC CCCTCAACAG CCATCAGGTT GGCTCAGACC TGAGGACTCG TCTGGATTGG
TTACGTCAGG ACCAGCGAGA AATTCATCGA TCTGCCAGAC AAGGCCATCA ACAGATGCGC
CGTCTCAGTC AAAGGCTGCT TGGTCAACTC AAGACCATTA GGCAAGACGA TCAATACAGC
AAACAAGCAA ATAAAGACCT CTCAGAACAT GCCCTGGCAG CACAACTAAT TGCCACAGCC
TTCCCGGAAT GGTTGGCCTT GGAACGACCA GGAAAAGCCG GACACTATCG ATTGCGACAA
GGACGCGGCG CCATTCTCCG CCAGCATGAC CCTCTCAGAT CTTCTCCTGC CCTAGCAGTT
GCAAGGGTGG ATCTTGGCCA GGCCAACACA CTCATCCAGC TCGCAATCCC CCTGCCGATG
CAATGGGTAG AGACGCTGAG CCAGACAGAT GGGGAATGGA GTGAATCAGT GAGCTGGGAT
GAAAAAAGCT CGCGAATACG AGCAGAGCGA CTGTTGAAGA TCGGCGAACT ACTAATCCAA
AGGGAACGCC TGCCACAGCC CGAACCAGAA CACTGCCGCA AGATCCTGCT CGATGTCTTG
TGCCATCAGG GTCTAGGGCA ACTCCCCTGG GGCCGTCGCA GCCAACAACT GCGTGCACGC
CTGGAACTCG CCCACCGCCA CCTAGGCACC CCCTGGCCAC CTCGCGACCT TAAATTCCTT
GGCCATCAGC CAAGTTCATG GCTCAATCAA CCGCTGTTGG GTTGCCATAG CTTGGATGAG
CTGGGTGAAG AAGGGCTAAT AGAAGCTCTC TGGGGAGAGC TCCCCTGGGA GATGCGCCAG
ACACTAGACA TCCTGCTGCC AAACCAGCTA ACCATTCCCT CTGGTCGGTC TGCTGTACTC
AACTATGGCG ATGGAGAGGT GAAATTATCG GTGAAGCTTC AAGAAATGTT TGGCTGCGAA
GACGGTCCAA AACTGATCAA TGGCAAGCTT CCCGTGACCC TTGAACTGCT CTCTCCAGCA
GGGCGTACTC TGCAGCTCAC AACAGATCTA GCAGGCTTCT GGAGTGATAG CTATCAGGAC
GTGCGCCGCG AAATGCGCGG TCGCTACCCG AAGCATCCCT GGCCAGAGAA CCCGCGAGCA
GCCCAAGCAA CCGCCCGCAT CAAAAAGCAC ATGGGCGGAT GA
|
|---|
| Protein sequence | MGDLPIDSLL TQLCHSLTAS ATVLLQAPPG AGKTTRVPLA LMGALDGHTP LPGRIWMLEP
RRLAVKAAAS RLAASLKEPL GERVGFAIRH EQLRSKRTQL EVITDGLFLR RLQSDPSLNG
IDCVIFDEFH ERRRDSDLAL ALLLEARPLL HPELRLLLMS ATLNLGELQD RLPEATLLQS
EGKAFPVATH HQTPRPDEPL PHQVMRAIKA HALPLTEASD RTSSRPTVLV FLPGQREIKR
TQELLAAQES LTHWNLAYLH GQQPLHVQAR ALLGAESPWI GKIVLASSIA ESSLTLEGVR
LVIDSGLSRQ SRFDPNTGME GLETVPSSLA SANQRQGRAG RQSPGQCVRL WSLAEQLRKP
EHAPPEVLVA DPMPVVLELA AWGAGLGETL PWIDPPPQSA LQKGRQQLIN LNALKHDGRI
TTLGRHLCKL GIHPRLGILL LQAKGWGCAA LGAELAALLG DRDPLNSHQV GSDLRTRLDW
LRQDQREIHR SARQGHQQMR RLSQRLLGQL KTIRQDDQYS KQANKDLSEH ALAAQLIATA
FPEWLALERP GKAGHYRLRQ GRGAILRQHD PLRSSPALAV ARVDLGQANT LIQLAIPLPM
QWVETLSQTD GEWSESVSWD EKSSRIRAER LLKIGELLIQ RERLPQPEPE HCRKILLDVL
CHQGLGQLPW GRRSQQLRAR LELAHRHLGT PWPPRDLKFL GHQPSSWLNQ PLLGCHSLDE
LGEEGLIEAL WGELPWEMRQ TLDILLPNQL TIPSGRSAVL NYGDGEVKLS VKLQEMFGCE
DGPKLINGKL PVTLELLSPA GRTLQLTTDL AGFWSDSYQD VRREMRGRYP KHPWPENPRA
AQATARIKKH MGG
|
|---|
| |