| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9301_05561 |
|---|
| Symbol | rps1b |
|---|
| ID | 4912079 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9301 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009091 |
|---|
| Strand | - |
|---|
| Start bp | 485924 |
|---|
| End bp | 487129 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 640160136 |
|---|
| Product | 30S ribosomal protein S1-like protein B, putative Nbp1 |
|---|
| Protein accession | YP_001090780 |
|---|
| Protein GI | 126695894 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0539] Ribosomal protein S1 |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.748166 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGGAGTCA GTAATAAAAA TGCCCAAGAT AATATCGAAC CAAAGGGCAA TAAAAAACCT
CTTCAGGTAC TTCACATAAG CAAGAAAGAT ACTCAAAAAA TAGATATTGA GCACTCCAAT
TCGCAAGAAG AAATTAAAAA AGAAGATATC GCAATCAAAC CGCAAATCAT TAAAAATGAT
TCAGTAAAAA AAATTGAGGA GAATTATGAA AACACCAAGG ATTTTGATAT TTCTCTACAA
AATTCAACTC AACAAGACTT AAATAGACCC CTTAATTTTT CTGAGCAAAA CCCAGATTTT
CATTCAGAAA GAACAGTTGA TGAATTCGAT TTTGATGAAA GTGCTTTTTT GGAGGCTTTA
AATGCAAATG AGCCAATCGG GGCTACAGGA GAAACAATTT CAGGTAAGGT TATAGCAATC
GAAAGTGATG GACTATATAT TGACATTGGC GGAAAAGCAC CTGGTTATAT GCCCAAAAAA
GAATGTGGTT TGGGTGTCAT TACTAACTTT AAAGAAAAGT TTTCTATAGG CCTTGAAATG
GAAGTTTTGG TTATCAAAGA ACAAAATGCT GATGGGATGG TAACAGTGAG CGCTCGGGCA
TTAATTCTCA GGCAAAGTTG GGAGAAAGTA TCAAGTTCCG CAAAAAATGG AGAATTAATT
AACGTTTTAA TTAATGGATT TAATAGAGGT GGGCTTACGT GTGATGTAGA TGGATTAAGA
GGATTCATTC CAAGATCTCA ACTTGAAGAT GGTCAAGATT ATCAATCTTT TGTTGGCAAA
ACTCTAAAAG TAGCGTTTCT TGAGGTGAAT CCAGAATCCA GAAAATTAGT TCTCTCTGAA
AAGAAAGCAT CATTAGTCTC TAAACTTACA AGTTTAGAAT TAGGTCAATT AATTGAAGGA
GAAGTTTTAG CAGTAAAACC ATATGGCTTC TTTATAGATT TAGGCGGAGC TAGTGGACTT
CTTCATCAAT CTTCACTAAC AAATGGATCG ATTCGTTCTC TAAGAGAAGT TTTTAGAGAA
GGGGAAATGA TAAAAGCTTT AATATCTGAA ATAGACCTCG AAAAAGGTCG TATTGGTCTC
AATACAGCAC TCTTAGAAAA CTCTGCGGGA GAATTAATTA TTGATAAGCA AAAAGTTATG
CAAGAAGCCA CAGAGAGAGC ACTAAAAACT AAAGCACTCT TCGATAAAAA AGAACAAGAT
AAATGA
|
|---|
| Protein sequence | MGVSNKNAQD NIEPKGNKKP LQVLHISKKD TQKIDIEHSN SQEEIKKEDI AIKPQIIKND
SVKKIEENYE NTKDFDISLQ NSTQQDLNRP LNFSEQNPDF HSERTVDEFD FDESAFLEAL
NANEPIGATG ETISGKVIAI ESDGLYIDIG GKAPGYMPKK ECGLGVITNF KEKFSIGLEM
EVLVIKEQNA DGMVTVSARA LILRQSWEKV SSSAKNGELI NVLINGFNRG GLTCDVDGLR
GFIPRSQLED GQDYQSFVGK TLKVAFLEVN PESRKLVLSE KKASLVSKLT SLELGQLIEG
EVLAVKPYGF FIDLGGASGL LHQSSLTNGS IRSLREVFRE GEMIKALISE IDLEKGRIGL
NTALLENSAG ELIIDKQKVM QEATERALKT KALFDKKEQD K
|
|---|
| |