| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | P9211_15571 |
|---|
| Symbol | atpD |
|---|
| ID | 5730487 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Prochlorococcus marinus str. MIT 9211 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009976 |
|---|
| Strand | + |
|---|
| Start bp | 1389417 |
|---|
| End bp | 1390883 |
|---|
| Gene Length | 1467 bp |
|---|
| Protein Length | 488 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 641285935 |
|---|
| Product | F0F1 ATP synthase subunit beta |
|---|
| Protein accession | YP_001551442 |
|---|
| Protein GI | 159904098 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG0055] F0F1-type ATP synthase, beta subunit |
|---|
| TIGRFAM ID | [TIGR01039] ATP synthase, F1 beta subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 40 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCCCTG CAGCAACTGC CTCAACCGGT ACAAAGGGAA TTGTCCGTCA AGTTATTGGA
CCAGTTTTAG ATGTTGAATT TCCCGCTGGG AAGCTGCCCA AAATCTTGAA TGCACTTCGA
ATAGAAGGCA AAAATCCAGC AGGTCAAGAC ATTGGACTAA CAGCAGAGGT CCAACAATTG
TTAGGAGATC ACCGTGTTCG TGCTGTTGCT ATGAGCGGGA CAGATGGTCT CGTAAGAGGC
ATGGAGGCTG TTGATACTGG AGCCCCAATA TCTGTTCCTG TTGGAGAAGC GACTCTAGGA
AGAATTTTTA ATGTTTTAGG CGAACCTGTT GATGAGCAAG GACCTATTAA AAGTTCAACG
ACTTCACCAA TCCATAGATC AGCTCCAAAA TTAACTGATC TCGAAACAAA GCCAAAAGTA
TTTGAAACAG GGATCAAAGT TATTGATCTA CTCGCTCCAT ATAGGCAAGG CGGCAAAGTA
GGTCTTTTTG GTGGAGCTGG TGTTGGTAAA ACTGTTTTAA TTCAAGAATT AATTAACAAT
ATCGCCAAAG AGCATGGGGG TGTTTCAGTT TTTGGGGGTG TTGGAGAGCG TACACGCGAG
GGAAATGATT TATATGAAGA ATTTAAAGAA TCTGGAGTTA TAAATGCCGA CAATCTAACT
GAGTCAAAGG TAGCCCTTTG TTTCGGCCAA ATGAATGAGC CACCAGGCGC AAGAATGAGA
GTTGGCCTTT CAGCTTTAAC GATGGCTGAA CACTTTAGAG ATGTTAATAA GCAAGATGTT
CTGTTATTCA TTGATAATAT TTTCCGCTTT GTGCAGGCTG GTTCAGAAGT ATCTGCTCTC
TTAGGCAGAA TGCCGTCTGC TGTGGGTTAT CAACCAACAT TGGGAACAGA CGTTGGTGAA
CTTCAAGAGC GAATAACTTC AACACTTGAA GGATCAATAA CTTCTATTCA GGCAGTTTAT
GTTCCTGCAG ATGACTTAAC AGACCCAGCT CCAGCAACAA CTTTTGCACA CCTTGATGCA
ACAACGGTTC TTGCAAGAGC TTTAGCGGCA AAAGGTATAT ATCCTGCTGT TGATCCACTC
GATTCAACAA GTACCATGCT CCAGCCAGCA GTTGTTGGCG ACGAGCATTA CCGTACTGCA
AGAGCCGTAC AATCAACCCT ACAAAGATAT AAAGAACTTC AGGACATCAT TGCAATTCTT
GGATTAGATG AGCTCTCTGA AGAAGATAGA AAAACTTTTG ATAGAGCTAG AAAAATAGAA
AAGTTTTTAT CTCAGCCATT CTTTGTTGCA GAGATCTTTA CAGGCATGTC AGGTAAATAC
GTGAAGCTAG AAGAAACAAT TGCAGGTTTT AACATGATTC TATCTGGAGA ACTTGATAAT
CTTCCTGAGC AAGCTTTTTA TCTAGTAGGA AATATCGAGG AAGTAAAAGC AAAAGCTCAA
AAAATCAACT CAGAAAATAA AGGATAA
|
|---|
| Protein sequence | MAPAATASTG TKGIVRQVIG PVLDVEFPAG KLPKILNALR IEGKNPAGQD IGLTAEVQQL
LGDHRVRAVA MSGTDGLVRG MEAVDTGAPI SVPVGEATLG RIFNVLGEPV DEQGPIKSST
TSPIHRSAPK LTDLETKPKV FETGIKVIDL LAPYRQGGKV GLFGGAGVGK TVLIQELINN
IAKEHGGVSV FGGVGERTRE GNDLYEEFKE SGVINADNLT ESKVALCFGQ MNEPPGARMR
VGLSALTMAE HFRDVNKQDV LLFIDNIFRF VQAGSEVSAL LGRMPSAVGY QPTLGTDVGE
LQERITSTLE GSITSIQAVY VPADDLTDPA PATTFAHLDA TTVLARALAA KGIYPAVDPL
DSTSTMLQPA VVGDEHYRTA RAVQSTLQRY KELQDIIAIL GLDELSEEDR KTFDRARKIE
KFLSQPFFVA EIFTGMSGKY VKLEETIAGF NMILSGELDN LPEQAFYLVG NIEEVKAKAQ
KINSENKG
|
|---|
| |