| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4634 |
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| Symbol | |
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| ID | 6206117 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | + |
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| Start bp | 5955082 |
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| End bp | 5957115 |
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| Gene Length | 2034 bp |
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| Protein Length | 677 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 641694301 |
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| Product | 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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| Protein accession | YP_001821504 |
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| Protein GI | 182416438 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG0821] Enzyme involved in the deoxyxylulose pathway of isoprenoid biosynthesis |
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| TIGRFAM ID | [TIGR00612] 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 24 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTTACT GTTCTTCCCG TTTCCACACC GTCCGCCGCC GCTCCCTCGA GGTGAAGGTC
GGCTCTGTCG GTGTCGGCGG CGACAATCCG ATCCGCATCC AATCGATGAC CACCAGCGAC
ACGCAGGATG TCGCGGCCAC GGTGGCCCAG GCGATCGCCC TGGCCGAAGT CGGATGCGAG
ATCGTGCGCG TCACCGCGCC CAACATCGCT GCCGCGCAGT GTCTCAAGGA GATCCGTGAG
CGGTTCACGG CGGCGGGCTT CGGGGCGGTG CCGTTGGTCG CCGACATCCA TTTCCTTCCG
GCCGCAGCGA TGGAAGCCAT CGAGCACGTC GAAAAGGTGC GCGTGAATCC GGGCAACTAC
GCCGACAAGA AAAAGTTCGC CGTGCGGGAA TACACCGACA CCGACTACGA GCGCGAATTG
CAGCGGCTGC ACGAGACATT CTCGCCGCTG GTGCTGCGCG CCAAGGCCCT CGGCCGCTCG
CTGCGCATCG GCACCAATCA CGGTTCGCTC AGTGACCGGA TCATGAACCG CTACGGCGAC
ACGCCGCTCG GCATGGTCGA AAGCGCCCTG GAATTTCTCC GCATCGCCGA GTCGCACGGG
TTTGACCAGC TGATCCTCTC GATGAAGGCC TCGAATCCGA AAGTGATGAT TCAGGCCTAC
CGGCTCTTGG TCGAGCGGAT GCAGCAAGAG GCCATGCACT ACCCGCTGCA TCTCGGTGTC
ACCGAAGCCG GCGATGGCGA GGACGGACGA ATCAAGAGCG CGATCGGCAT CGGCTCGCTC
TTGCTCGACG GGCTCGGCGA CACGATCCGC GTCTCGCTCA CCGAGGACAG CGTCTACGAA
ATTCCCGTCG CGCAAGTCCT CGCCGCGAAG GCCATGTCGC TGTGGCAGCC CGTGAACTCC
GAATGCCTGA CTCCGGACTC TGCCTTCCTC GGCGCCAATT CGATCGATCC CTTCCACTTC
ACCCGCCGCG TGACGGCATC GATCCGGTTC GCCGACAAGA TCGCCGTCGG GCCGGAGCTT
CCGCCCGTCG TGCTGACCCG GGTCGCGGCC GGAGATCTGG CCGTGCTGCG CTCGGCCGTG
ACGAACCGGC GGCTCGCCGA TACGCCCGCC GAAGGCTTGA TCGTTTCGAT CGATGCTCCG
GCCGGGCTCG CAACCCTCCC CGCCCCCGGC CACGCGTTCT ACGCGCTCGA GCTCGCCCCC
GCTGTTTCCG CTGCGGCCGT GGCCGCGCAA GCAGTGCAAT TGCCAGCAGG CACGTTGATC
GTGCACGCGT TCTCCACCGA GGCGGCGACC GAGCTCGCCG CCTTCGCCGA GTTGGTGCGC
GAGCGACCCC TTATCCTCGC CGCGGATATC GCTCCGGGAA ATATCCCCGC TCTCGCGCCC
ATCCTTCGCA CGGTCCCGGA AGACCGGCTG CTCTTCACGC TCAGCTCTCA GCTCTCCGCT
CCCGGCTCTT CAACCCACGC CGTCGGCAGC TATCGCCAGC TCAGCGAAGC CCTCCGCCAC
GCCGGCCTGC GGGCGCCAAT CTGGATTCGC AACACCGCCC GCTCCGCCAT CCGCGACGAA
CCCAGCTTCC TCTCAAAATT GCTCGAGGCG AGCATCCTCA CCGGCGCGCT GCTCTGCGAT
GGCATCGGCG ATCTCGTCAG CCTCGAGACC GAGGCCGATC CGGTGCGCGC GACCAAGCTC
GCCTACAATG TTCTCCAGGG CGCCGGCGCC CGCACCTCGA AGACCGAGTT CGTCGCGTGT
CCCAGCTGCG GGCGCACGCT GTTCGATCTG CAGACGACGA CCCAGCGAAT ACGAGCGCAG
ACGGGGCATC TCAAGGGCGT CAAACTCGCG ATCATGGGCT GCATCGTGAA CGGCCCCGGC
GAAATGGCGG ATGCCGATTT CGGCTACGTC GGCGGGGCGC CCGGCAAGAT CAATCTCTAC
GTCGGCAAGC AGTGCGTCGC CTACAACATT CCCCAAGCCG AGGCCGACGC GCGTTTGATC
GCGCTCATCA AGGAGCACGG CAAATGGGTG GACCCGCAAC CCGCGGCCGT GTGA
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| Protein sequence | MSYCSSRFHT VRRRSLEVKV GSVGVGGDNP IRIQSMTTSD TQDVAATVAQ AIALAEVGCE
IVRVTAPNIA AAQCLKEIRE RFTAAGFGAV PLVADIHFLP AAAMEAIEHV EKVRVNPGNY
ADKKKFAVRE YTDTDYEREL QRLHETFSPL VLRAKALGRS LRIGTNHGSL SDRIMNRYGD
TPLGMVESAL EFLRIAESHG FDQLILSMKA SNPKVMIQAY RLLVERMQQE AMHYPLHLGV
TEAGDGEDGR IKSAIGIGSL LLDGLGDTIR VSLTEDSVYE IPVAQVLAAK AMSLWQPVNS
ECLTPDSAFL GANSIDPFHF TRRVTASIRF ADKIAVGPEL PPVVLTRVAA GDLAVLRSAV
TNRRLADTPA EGLIVSIDAP AGLATLPAPG HAFYALELAP AVSAAAVAAQ AVQLPAGTLI
VHAFSTEAAT ELAAFAELVR ERPLILAADI APGNIPALAP ILRTVPEDRL LFTLSSQLSA
PGSSTHAVGS YRQLSEALRH AGLRAPIWIR NTARSAIRDE PSFLSKLLEA SILTGALLCD
GIGDLVSLET EADPVRATKL AYNVLQGAGA RTSKTEFVAC PSCGRTLFDL QTTTQRIRAQ
TGHLKGVKLA IMGCIVNGPG EMADADFGYV GGAPGKINLY VGKQCVAYNI PQAEADARLI
ALIKEHGKWV DPQPAAV
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