| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4330 |
|---|
| Symbol | |
|---|
| ID | 6205186 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 5617384 |
|---|
| End bp | 5618940 |
|---|
| Gene Length | 1557 bp |
|---|
| Protein Length | 518 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 641693997 |
|---|
| Product | WD40 domain-containing protein |
|---|
| Protein accession | YP_001821202 |
|---|
| Protein GI | 182416136 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.94095 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 13 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACCT TCGCGTGTTC CCGCTGGTTG CTCTGCTCGC TGCTCACGTT CTGCGCTCCT
GCGCTCGCCG TTCTCGCCGC CGAATCCGGT GCGGTGGGAC AATTCGCCGC TCATGGCGAC
GTCGGCGCAC CGGCGATCGC CGGCGCGACC GTCTACGACG CCGGCCTGCA GCAGTATCGC
ATGAGCGCGG GCGGCATCAA CCTGTGGGGG CCGTCGGACC AGTTTCAGTT CGCATGGAAC
AAGATGAAGG GCGACTTCAT CGTTCGCGCG CGGTTCAATC TCGTCGGCAC GGGCACCGAC
CTGCATCGCA AGCTCGGCTG GATGGTCCGG AAATCACTCG ATCGCGATTC GGCGTATGCG
GATGCGTGTG TGCACGGCGA CGGGCTTACC TCGCTGCAGT TCCGGCGCAG CGCGGGAGCC
GAGACCGAGC AGGTCGTGCT GCCGATCACC GGCGGCGACG TGATCCAGTT TGAGCGCCGC
GGCGGCACTT ACATTTTCTC CTCGGCCCAC TACGGTGAGC CGTTCGTCTC GGCGGAGCTG
AAGGACGTCG ATCTCGGCGA CGAGGTGTTT GTCGGGCTTT TCCTCTGCTC GCACAATCCC
GACGTGAAGG AGGAGGCGAT CCTGAAGGAC GTGCGCATCA TTCGTCCGCC CAAGGCCGGC
TACGTGCCGT ATCGCGACTA CATCGGCGCG CACCTCGAGA TCCTCAACGT GTTCACGGGA
CAGCTCGCGA TCGTGCACAG CTCCCCCGAG CAGTTCGAGG CGCCGAACTG GTTTCCGGAC
CACAAGACGC TGCTCGTGAA CATCAGCGGG CCCGGCGCGA ACAAGGGGCG GCTGCAGACA
CTTGATCTCG TGACGAAGCA GACGGCGCTG CTCGACACCG GATTTGCGAC GCGGAACAAC
AACGATCACG TGCTGACGTT CGACGGGAAG CAGCTCGGCA TCAGCCATCA CACCGCGGAG
GACGATGGGC GTTCGGTCGT CTACAAGTTA CCCTCGACGG GCGGAACGCC CGTGCGCGTG
ACGCCGAAGT CGCCGTCGTA TTTTCACGGC TGGTCGCCGG ACGGAAAGTG GATGGTCTAC
ACCGGCGGCC GCAAAGAGAC GCCCGGCGGC CCGGACAAAT ACGACATCTA CAAGATTTCC
GCCGACGGCG GGGAAGAGGT CCGGCTGACC AACAGCCCCG GGTTGAGCGA CGGCCCGGAG
TTTTCGCGGG ACGGGCAGTG GATCTACTTC AACTCCACCC GCACGGGGCT GATGCAGCTT
TGGCGCATGC GGCCGGATGG CTCGGGTCAG GAGCAGTTGA CGAACGACGA GTTCAACAAC
TGGTTCCCGC ATCTCTCGCC GGACGGAAAA TGGATCGCGT TCATCTCCTA CGGTCAGGAC
GTGAAGCCGT CGGAGCACCC CTATTACAAG CAGGTCTATC TGCGACTGAT GCCGGCCAGC
GGCGGCCAGC CGCGCGTGAT CGCTTACGTC TACGGCGGCC AGGGCACGAT CAACGTGCCC
TCGTGGGCGC CCGACAGCAC GCGAATCGCG TTTGTCAGCA ACACGGACAT GCAATGA
|
|---|
| Protein sequence | MKTFACSRWL LCSLLTFCAP ALAVLAAESG AVGQFAAHGD VGAPAIAGAT VYDAGLQQYR
MSAGGINLWG PSDQFQFAWN KMKGDFIVRA RFNLVGTGTD LHRKLGWMVR KSLDRDSAYA
DACVHGDGLT SLQFRRSAGA ETEQVVLPIT GGDVIQFERR GGTYIFSSAH YGEPFVSAEL
KDVDLGDEVF VGLFLCSHNP DVKEEAILKD VRIIRPPKAG YVPYRDYIGA HLEILNVFTG
QLAIVHSSPE QFEAPNWFPD HKTLLVNISG PGANKGRLQT LDLVTKQTAL LDTGFATRNN
NDHVLTFDGK QLGISHHTAE DDGRSVVYKL PSTGGTPVRV TPKSPSYFHG WSPDGKWMVY
TGGRKETPGG PDKYDIYKIS ADGGEEVRLT NSPGLSDGPE FSRDGQWIYF NSTRTGLMQL
WRMRPDGSGQ EQLTNDEFNN WFPHLSPDGK WIAFISYGQD VKPSEHPYYK QVYLRLMPAS
GGQPRVIAYV YGGQGTINVP SWAPDSTRIA FVSNTDMQ
|
|---|
| |