| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_4202 |
|---|
| Symbol | |
|---|
| ID | 6208685 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 5428148 |
|---|
| End bp | 5429371 |
|---|
| Gene Length | 1224 bp |
|---|
| Protein Length | 407 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641693870 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001821075 |
|---|
| Protein GI | 182416009 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.217189 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAGACGA AACCCACCAT GAACGACGAC GACGCCCTGC TTCGCTCCCA CGTCGAACAT
CGGTCCGAAC AGGCCTTCAC GGAACTCGTC CAGCGCCACA TCGGACTCGT CTACGCCACC
GCGCTGCGCC AGCTCGGCCA GGACACGCAT CTGGCCGAGG ACGTCACGCA AAGCGTGTTC
ACCGATCTCG CCCGCAAAGC CGCCGGATTG TGCGGCCACG CCACGGTCGC CGGTTGGCTC
TACGTCAGCA CGCGCAAAGC TGCCGCCGCG GTCGTCCGGC GCGAGCAGCG GCGCAAGCGT
CGCGAACAGG TCGCCCACTC CATGCACCTC ACCGATTCGC CCGATGCGCC CAACGCCGAT
TTCGCCCGGC TCCGCTCGGT GCTCGACGAT GCGCTCGTCG AACTGAAGCC CGATGAGCAG
GAAGCGATCG TCCTGCGCTT CTTCGAAAAA CACACGCTCG CCGAGGTCGG CGCCGTCCTG
CGCGTCACCG AGGAAGCCGC CCGCAAGCGC GTGGACCGCG CTCTGGAAAA ACTGCACGGT
GTGCTGACGC GCCGCGGCAT CACGTCCACC AGCGTTGCCC TCGGCGCTGC GCTGTCGCAA
GCCGGTGCCG CCAGCGTGCC CGCCGGGCTC GCCGCCAAGG TCGCCGGCGT CGCCGTGGCG
CAGGTCGGCG CCGCCAGCGC CTTCAGCTTC GCCTCGCTCG CCGCGACCTT GATCCCTCCC
ACCGCTGCCG CGCTGGTGGG CGCGCTCGGG CTGATTCCGC AGCACCGGAC CAATCACGCA
GCGGCCGCCG AACTCGCCGA GCTCACCGCC GCGAATTCGG CTCTGCCCGC GCTGCGCACG
GAGGTCACAC AACTCGCCCG CACGCTCGCC GACGCCCGTG AACTCGAGCG GGCAGCCGCC
GAGCTGCCCG ACCTGCGCGC CACTCTGGCG GCCTTGCCTC CGCCGCCGCC GCTCGTCACG
ACGAGCAACG CCGTCACGAT CACGCCGCAG GGCACGATCT CCTGGGAGGG CGAACACATC
ACGCTCGACC ACTTCGAGTC CAATCTCACC GCGCTTCATC TCGCCGCGAG CAACGGTGAA
TCCAAGCTGC TGATCCACGC GCGCGGAGTG CAATATCCCC AGATGATCTA CGCCCTCGAC
GAGGCCCGGA AGGCCGGCGT CCGGCACATC GTGGTCGACA GCGACGCGAT GCCCGACCCG
AAATTCCCCT TCAGCTGGTT CTAG
|
|---|
| Protein sequence | METKPTMNDD DALLRSHVEH RSEQAFTELV QRHIGLVYAT ALRQLGQDTH LAEDVTQSVF
TDLARKAAGL CGHATVAGWL YVSTRKAAAA VVRREQRRKR REQVAHSMHL TDSPDAPNAD
FARLRSVLDD ALVELKPDEQ EAIVLRFFEK HTLAEVGAVL RVTEEAARKR VDRALEKLHG
VLTRRGITST SVALGAALSQ AGAASVPAGL AAKVAGVAVA QVGAASAFSF ASLAATLIPP
TAAALVGALG LIPQHRTNHA AAAELAELTA ANSALPALRT EVTQLARTLA DARELERAAA
ELPDLRATLA ALPPPPPLVT TSNAVTITPQ GTISWEGEHI TLDHFESNLT ALHLAASNGE
SKLLIHARGV QYPQMIYALD EARKAGVRHI VVDSDAMPDP KFPFSWF
|
|---|
| |