Gene Oter_3827 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagOter_3827 
Symbol 
ID6205839 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameOpitutus terrae PB90-1 
KingdomBacteria 
Replicon accessionNC_010571 
Strand- 
Start bp4971269 
End bp4972315 
Gene Length1047 bp 
Protein Length348 aa 
Translation table11 
GC content63% 
IMG OID641693494 
Productglyceraldehyde-3-phosphate dehydrogenase, type I 
Protein accessionYP_001820701 
Protein GI182415635 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG0057] Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase 
TIGRFAM ID[TIGR01534] glyceraldehyde-3-phosphate dehydrogenase, type I 


Plasmid Coverage information

Num covering plasmid clones11 
Plasmid unclonability p-value0.327654 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones9 
Fosmid unclonability p-value0.464101 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCAGTTA AAGTCGCAAT CAATGGTTTC GGCCGCATCG GCCGCCTCGT TTTCCGCGCT 
CTCGTCGAGC AGGGGCTCCT GGGCTCCACG TTCGACGTTG TGGCCGTGGG TGATATCGTC 
CCCGCGGACA ATCTCGCTTA CCTGCTGAAA TACGATTCCA CGCAGGGCAA GTTCAACGGC 
ACCGTCTCCT CCAAGAAGTC GGCCGCCGAC AAGGCCGAGG ACGACGTGCT CGTCGTCAAC 
GGCCATGACA TCAAGGTCGT GTCCGCCAAG ACCCCGGCCG AGCTGCCGTG GGCCGCGATG 
GGCGTCCAGC TCGTCATCGA GTCGACCGGC CTCTTCACCG CCGCCGAAAA GGCCCAAGGC 
CACATCACGG CGGGCGCCAA GAAGGTCATC ATCTCCGCTC CGGCGAAGGG CGAAGACATC 
ACCGTCGTCA TGGGCGTCAA CGACGACAAA CTCGACGTCA AGAAGCACAA CATCATCTCC 
AACGCGTCCT GCACCACGAA CTGCCTCGCG CCCGTGGTGG CCGTGCTGCT CAAGGAAGGC 
TTCGGCGTCG AGGAAGGTCT GATGACCACC GTCCACGCCT ACACCGCCAC CCAGAAGACG 
GTGGACGGTC CCTCCAAGAA GGATTGGAAG GGTGGCCGCA CCGCCGCGCA GAACATCATT 
CCGTCGACGA CCGGCGCCGC CAAGGCCACC GCGCTCGTGC TGCCGGAAGT GAAGGGCAAG 
CTCACCGGCA TGTCGCTCCG CGTTCCGGTG CCGACCGTCT CCGTGGTCGA TCTCACCGTG 
CGCACGACGA AGGAAACGTC CTACAAGGAG ATCTGCGAGG CCATGAAGCG GGCCAGCGAG 
ACCTACCTGA AGGGCATCCT CGGCTACACG ACCGACGAGG TCGTCTCGAG CGACTTCATC 
CATGACAAGC GCTCGTCGAT CTTCGACGCG GGCGCCGGCA TCGAGCTCAA CAGCAAATTC 
TTCAAGCTCG TGTCGTGGTA TGACAACGAG TGGGGTTATT CGAACCGCGT CGTCGATCTC 
ACCAAGAAGA TCGCCGCAGC GCTGTAA
 
Protein sequence
MAVKVAINGF GRIGRLVFRA LVEQGLLGST FDVVAVGDIV PADNLAYLLK YDSTQGKFNG 
TVSSKKSAAD KAEDDVLVVN GHDIKVVSAK TPAELPWAAM GVQLVIESTG LFTAAEKAQG 
HITAGAKKVI ISAPAKGEDI TVVMGVNDDK LDVKKHNIIS NASCTTNCLA PVVAVLLKEG 
FGVEEGLMTT VHAYTATQKT VDGPSKKDWK GGRTAAQNII PSTTGAAKAT ALVLPEVKGK 
LTGMSLRVPV PTVSVVDLTV RTTKETSYKE ICEAMKRASE TYLKGILGYT TDEVVSSDFI 
HDKRSSIFDA GAGIELNSKF FKLVSWYDNE WGYSNRVVDL TKKIAAAL