| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_3158 |
|---|
| Symbol | |
|---|
| ID | 6205238 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 4109773 |
|---|
| End bp | 4110312 |
|---|
| Gene Length | 540 bp |
|---|
| Protein Length | 179 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641692824 |
|---|
| Product | ECF subfamily RNA polymerase sigma-24 factor |
|---|
| Protein accession | YP_001820038 |
|---|
| Protein GI | 182414972 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
|---|
| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family
[TIGR02989] RNA polymerase sigma-70 factor, Rhodopirellula/Verrucomicrobium family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 0.968556 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGACAG CCACGCCCAC TCGAACAGAT CGTTTTGAAA CGCTGGTGCG CGAGCACCAG
GCCGGACTGC GCGCATATGT GCGCGCGCTC GGTGCGCAGG ACGCGTGGGT CGATGATCTC
GCCCAGGAAG TCTTTCTCGT TGCGTATCGA CGGATGGAGC ATTTCGAGGC GGGCGGTGAC
TTTGGCCGCT GGTTGCGTGG GATCGCCCGC AATCTCGTGC TGAACGATCT CCGCAAGAAC
GCGCGCCGCT GGCGGCTGCT GCAGGATGCG ATCACAGAGG TGTTGGTGGA CGACGAGGCC
GCGGATCGCT GCGGGGAAGC GCCGACCGCC GGATTGCTGA GCGCGATGAA CGACTGCGTC
GCGCAGTTGC CCGCGCGCAG CCGCGAGCTG CTGCAACGGC GCTACCGCGA CAGCGCCGAT
GCGCCGACGC TCGCGCGCAA TTTCAATCTC AGCGCCGCGG CCGTGCGCCA GACGCTGGTG
CGGAGCCGTG CGGCGGTGCG ACGCTGCATC GACGCCAAAG TCGGGGAGGC TTGGCTGTGA
|
|---|
| Protein sequence | MTTATPTRTD RFETLVREHQ AGLRAYVRAL GAQDAWVDDL AQEVFLVAYR RMEHFEAGGD
FGRWLRGIAR NLVLNDLRKN ARRWRLLQDA ITEVLVDDEA ADRCGEAPTA GLLSAMNDCV
AQLPARSREL LQRRYRDSAD APTLARNFNL SAAAVRQTLV RSRAAVRRCI DAKVGEAWL
|
|---|
| |