| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2515 |
|---|
| Symbol | |
|---|
| ID | 6206468 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | - |
|---|
| Start bp | 3239692 |
|---|
| End bp | 3242445 |
|---|
| Gene Length | 2754 bp |
|---|
| Protein Length | 917 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 641692175 |
|---|
| Product | helicase c2 |
|---|
| Protein accession | YP_001819397 |
|---|
| Protein GI | 182414331 |
|---|
| COG category | [K] Transcription
[L] Replication, recombination and repair |
|---|
| COG ID | [COG1199] Rad3-related DNA helicases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTTTCG ATCTCGACCA ACGCACCGCC AGCCTGAGCG TCGGTGAGTT CTCCTCGTTC
ACCACGGGGC CGCGGGATTC GACCGGCGGT GCGCAGGGGC TCTGGCGCGC CCAGCTCGGC
ACGCACTGGC ACAACGCCTT GCGCGAGCAG GCCACCGCCG AGCGGCCGGA AACCGAATTC
GAGATCCCCA TCACCGGGCG GATCGTCCAC CACGGCTGGA CCCTCACACT GACCGGGCGC
ATCGACCAAC TGCTGCGCGA GCGCGAAACG ATCACGCTGC GCGAAATCAA AACCGTCACG
CGCGACCTCC CCACCGACGA GACCGAGCTG CGTGCAGCCT ACCCGGACTA TTTCGCCCAA
CTTGCTGCTT ACCTCGTGCT CGCCCGCGCG CCCGCCAATC CGGTGGGCCG CCTGCTCGAT
GATCAATATT CCGTCCGCGG CGAGCTCGTC TTCGTCGAGG TCGCCAGCGG ACTCGCGCAA
ACCGTTCCGC TCACGCCCGC CGACGACACG TTTTTCCGCG TTCAGCTCGC GCGTGTCGCC
GAGTTTCTCG ATCTGCGGCT GCGCGCGCGC GAGCGGCTGC GTCACCTGAC GTTCCGGCCG
GCCTTTGCCG TGCCGCGGCC GGGACAGGAG ACCACCCAGG CGGATCTTAC CGCGACGTTC
GAACGCCATC CGCTGGTGCT GTTCGAAGCG CCAACCGGTT TCGGCAAGAC CGGCGTGCTG
CTGGAGTTCG CGCTCGGCCA ATTGCGCGGC GGACACTTCG ACCGCGCGCT TTACCTCACG
AGCAAATCCA CCGGCCAGAT CCAGGTGGTC CGCACGCTCA GCGGCATGAC GGCAGCGCCG
TCAGCCGCCG TTGAACGTGC AACGTGTAAA GTTGAAGGCC CCAACGCCCG GAGCCCGTCC
GGTCCTCCCA CTTCAACTTC CCCCTTCAAC TCCGCCACCG GCGTGGCGGC GACCGCCGCT
ACCCCGGTGG CGGTCTGGCA CGTGCGCAAC AAAAGCGAGC ACTGCATCAA CGCCACGTTC
CACTGCGTGC GCGACGTCTG CAGCCATCTC GTCGACGCGG AGGCCCGCTG GGCCACGAGC
GGACTGGCGC GGTTTTACCT CGACGAGAAG CACCCGCGCG ATCTCGACAC GCTGCGCGCC
GCCGGCCGCG CGGCGCGGAT CTGCCCCTAC GAAATCACGC GGGCGGCGCT GGCGTTCAAC
GACGTGTGGA TCGGCGACTA CAACTACGTC TTCGCGCCGC GCAACCGCGG GTTGTTTTTC
GAGCAGCCGG GCTTCGATCC CGCCCGCACG CTGCTGCTGC TCGACGAAGC GCACAACCTG
CCCTCGCGCG TCGCCGATGC CTATTCGCAC GCGTTCAGGG CCAACGACGC GTTCGCCGTG
CGCGACGAGT TGCATCGCAC CCGGCCGCAC GCCTCGCTCG TGCACGCCTG GGGCCACTGG
TGCCACTTCC TCGACCACCT CCGCAGCGCG CACAGTTTGA CCGCGGATCA GGAGGACGAC
GCGCGCGATC TGCTGGGCGA GGTGGCGAAG CAGGTGGCCA GCGTGCCGCT CGATCTTGCG
ACGCTCGGCC CGCAGGTGGC GGATCTGCTC TGGCAGATTC CTTCGCTCGT CGACGAACTC
GCGGCCTCCG ATCTGCCCCG GCTATGGTGG ACTCCGCAGG ACCGCGAGCT CGCGCTCACC
TGCCTCGATG CCGCGCCCGC GATCGGCGCG ACGCTGCGCG AATTCGGCGG CGTCGTGCTG
GCAAGCGCCA CGCTCACGCC GATCGACGGC TTCGCCGCCG CCTGCGGCCT GCAGGGCGAG
GCGCCCGTGC CGCCGCAGAA AACGCCCCCC GCGGCAACCA CACCCGAGCG GCTGGGTGAA
CTGAACAAAC GCACGACCAA GAAACTTTTT CGCCAGCTCA CCAGCGCGGC CGAGTTGCTC
CGCGTCGAGG AAGCGCGCGA GGCATCGCAG CCCACGCTGC TGCGCGCCCA CACGCCATGG
CGCGACGGCA GCTACGACAT CGCCTGCGAC GTGCGAGTCG ACACGACGTT TCAGCATCGC
ACGCACCACT ATACCACGAC CGCGGCCACG ATCGCCTCGC TGCACCGTGC GGCGCGCGCA
GCGGGCCCGG CCACGCCCTC CGCCGCATCC ATTCCCGCTG CCGTCCCGTC GTCCGGCTCT
CAACCCTCAA CTCTCGCCTC TCAGCTTCTT TGCCCCTCGG TCGCCGTCTT CTTCCCATCC
TACGCCTACG CCGACGCCAT CCTGCGCGAG ATCGCCACGA TCGCGCCGGA GCTGCGCGTC
GCGCTGCAGC CGCGGATCCG CGATCTCGCG GCGCAATCGG CGTGGGTCGA GGAATCGTTG
CGCGACAGCC AGGCGCTCTT CCTCGTGCTC GGCTCCAGCT TTGCCGAAAG CATCGACGCG
CTCGGCGGCC GCGTGTCGCA CGCGCTGGTC GTCGGTCCTG CCCTGCCCGA GGTGAATCCG
GTGCAGCATG CGCGGCTCGC CGAGGCGACG CGCGCCGGGC TCTCGCGGGA CGCGGCGTTC
CGCCGCGTTT ACCAGATTCC CGGCATGACC AAGGTGAACC AGGCGCTGGG CCGGCTGGTC
CGCGCGCCCG GTCAGCACGC CAAGGTGCTG CTGCACTGCC GCCGGTTCGT GGAGCCCAGT
TATGCCAGCC TGCTCGCGCC CGACTACCGG AACGGCGTGA TCTTGCGGAG CGACGCGGAT
CTCGCGGCGT GGCTCGCGGG TTCGGCCACG CCGGCGCGCC CGGTCCAGCC ATGA
|
|---|
| Protein sequence | MLFDLDQRTA SLSVGEFSSF TTGPRDSTGG AQGLWRAQLG THWHNALREQ ATAERPETEF
EIPITGRIVH HGWTLTLTGR IDQLLRERET ITLREIKTVT RDLPTDETEL RAAYPDYFAQ
LAAYLVLARA PANPVGRLLD DQYSVRGELV FVEVASGLAQ TVPLTPADDT FFRVQLARVA
EFLDLRLRAR ERLRHLTFRP AFAVPRPGQE TTQADLTATF ERHPLVLFEA PTGFGKTGVL
LEFALGQLRG GHFDRALYLT SKSTGQIQVV RTLSGMTAAP SAAVERATCK VEGPNARSPS
GPPTSTSPFN SATGVAATAA TPVAVWHVRN KSEHCINATF HCVRDVCSHL VDAEARWATS
GLARFYLDEK HPRDLDTLRA AGRAARICPY EITRAALAFN DVWIGDYNYV FAPRNRGLFF
EQPGFDPART LLLLDEAHNL PSRVADAYSH AFRANDAFAV RDELHRTRPH ASLVHAWGHW
CHFLDHLRSA HSLTADQEDD ARDLLGEVAK QVASVPLDLA TLGPQVADLL WQIPSLVDEL
AASDLPRLWW TPQDRELALT CLDAAPAIGA TLREFGGVVL ASATLTPIDG FAAACGLQGE
APVPPQKTPP AATTPERLGE LNKRTTKKLF RQLTSAAELL RVEEAREASQ PTLLRAHTPW
RDGSYDIACD VRVDTTFQHR THHYTTTAAT IASLHRAARA AGPATPSAAS IPAAVPSSGS
QPSTLASQLL CPSVAVFFPS YAYADAILRE IATIAPELRV ALQPRIRDLA AQSAWVEESL
RDSQALFLVL GSSFAESIDA LGGRVSHALV VGPALPEVNP VQHARLAEAT RAGLSRDAAF
RRVYQIPGMT KVNQALGRLV RAPGQHAKVL LHCRRFVEPS YASLLAPDYR NGVILRSDAD
LAAWLAGSAT PARPVQP
|
|---|
| |