| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2486 |
|---|
| Symbol | |
|---|
| ID | 6207667 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3200791 |
|---|
| End bp | 3202857 |
|---|
| Gene Length | 2067 bp |
|---|
| Protein Length | 688 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 641692145 |
|---|
| Product | Sel1 domain-containing protein |
|---|
| Protein accession | YP_001819368 |
|---|
| Protein GI | 182414302 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0484] DnaJ-class molecular chaperone with C-terminal Zn finger domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.172439 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.868366 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACGCGT CCCCCGAGCC TGAGCCCAAG TCGGTCCTCC GAACGACCAC GCGCGCCGGC
GGCAAGGCGG CGCGCTGGCG ACTGCCCCGC TGGCCGGTGC TGGTCGGGAT GGTGGGCGTG
GGCGCGGCCG TGACGACCGG CACGCTCGTC AAACGCCGCG TGGACGCACG GCAGCACGCC
GAGATCCAGG CGATCCGGAT GGAGGTGAAT GCCTCGCGGT CCGAACTCGC GGTCTATTGG
GCGCGGGTGG TGAGTTTGCG AGCCGAGGCG GAGCGGATGC GTGCGGCCGC CGAATCGAGC
CGGGTGGAAC CGGCGAAGTC CTGGACGCGG GCCCGCGCGC GCTGTTTCGA TGGGTTCGTC
GAGCGGGTGC ATCGCCGTGC CGACGAGGTA GCGTTCGACG AGCAAAGCAA AGCGATCGAG
GCCGCGTGCG CGCGGGGCGA CGTAGCCGCG GCGCGGGCGG GCTTGCTGCA GTTGACCTCG
GTCAGTTTCC CGTCGACGGC AAAACTCGCC GCGTTGAAAG CCGAGGCGTA TCTGCAGCCG
CTGGCGGAGT TCAGCCGCCA GACGCCGGAC TACTATCGGG CATTTCAGCA GCACGAACCG
GAGGCGGCGC GCGAGGATTT CGCCGCGCTG CGGAAGGAGC TTGCCGGCGC CGAGATCGAA
GCGACGACGC CGCAGCTGAT GTTGAAGATG GAATTGTTCA GCACGGTCGC GCCCAAGGAC
GATCCGTTGC TGGAGGACAT TGCGGCGCTG GCGTCGGCAG CGGATTTTTT TGAGAACCCC
GATCCCGCTA CGCTCGCGGC GTGGCGGCGC GCGCAGCGCG CGATCCGGAT CGCGGAGTGG
CCGACGGCGG CGGCCGAGAT GCAGTCGATC TTGCGGACCA CGGTGAGGAC GCGGCAGCCC
TTCCGGGCAG CGTACGGGCG GGCAATCCTG CAGAACAAGC CGGACGATCC CGGCGCGGCG
TATCCGTATT TGGAAGAGGC CGCGGCCGCG GGCGACGCGG CGGCGCGGGC GTGGGTGGTG
CAGCAGGATC TGGCGCAGGG CCGCACCGCG CAGGCGTTGC GCTGGCTGGA AGTCGGCGCG
ATGGCGGGCG ACAAGGAGAA CGCGGCCAAA CTACTCGAAC TTTATGCCCT GCCGCGGACG
GCGGTGCCGC GCGATCCGAA ACGGGAAACC GGCGTGCTTT TGCGGCTCGC CGCGGGACCC
GATGCGCCGC CGCTTGTCGC TATGCTGCTC GCGCGACATT ACGAGGAGGG CGGCGGGTTG
CCGACCTCGC CGGCGAAGGC GTTCGCCTGC TATCGGGAAG CCGCGGAGAA GAAACACGTG
CCGGCGTTTG CGGAGGTCGC GCGACGTTAT CTGCAGGGCG ACGGCATCGC GGCGGACCCG
GATCAGGCGC GCGACTGGGC GTGCCGGGCG TTCGCCGCGG GCGAGCAGGA AGCGGCGTTG
CCGCTGCTCA TCGAGCTGAT GAACACCGCG CCGGAGCGAA CGGCGCCGGC GGTGCAGCAG
ATGTTCGAGC AGGAGCAAGT CGCGGGCGCG GCCGGGTTCG ACGACACGCG GATCGGCGGG
CCGAGCATGG CGCAGCTGCA GATGCAGCTC GCGCGGTTCT TCGATCAAGC GGGCGACTAC
GCGCAGGCGG CAAAGTTTTA TGAGAAATCC GGCAGCCGGG ATCCGGCGGT GATAAAACGC
CGCGGCGAGC TCACCACCGT GCGGCCGTGC GAAACCTGTG GTGGCGTCGG CAAGGTCAGA
CAGTCGCCGC CGTGCCCGAC GTGCGAGGGC AAGGGCACGG TGCTTTGCCC GTTGTGCGAC
GGCCGCGGGT ATAACTTTGC GCCGGGGAGT CCGCCGTGTT CGACCTGCGG CGGATCCGGA
CAGGTGCGGC AGGACGGCCA CGTGTTCGCG TGCTCGACCT GCGGCGGCAC GGGCAAGGCG
AAGAGCAGCG TGATCAAGCA GCCCTGTCCG AATTGCGCGC AGGGCAGGGC GGCGTGCCGC
GAATGCGGCG GCACGGGCCG GCGCACGGTG CTGAAAGAGT GTCCGGACTG TCATGGAACA
GGCGCCCGCG CGCTGGCGGA CCAGTAG
|
|---|
| Protein sequence | MDASPEPEPK SVLRTTTRAG GKAARWRLPR WPVLVGMVGV GAAVTTGTLV KRRVDARQHA
EIQAIRMEVN ASRSELAVYW ARVVSLRAEA ERMRAAAESS RVEPAKSWTR ARARCFDGFV
ERVHRRADEV AFDEQSKAIE AACARGDVAA ARAGLLQLTS VSFPSTAKLA ALKAEAYLQP
LAEFSRQTPD YYRAFQQHEP EAAREDFAAL RKELAGAEIE ATTPQLMLKM ELFSTVAPKD
DPLLEDIAAL ASAADFFENP DPATLAAWRR AQRAIRIAEW PTAAAEMQSI LRTTVRTRQP
FRAAYGRAIL QNKPDDPGAA YPYLEEAAAA GDAAARAWVV QQDLAQGRTA QALRWLEVGA
MAGDKENAAK LLELYALPRT AVPRDPKRET GVLLRLAAGP DAPPLVAMLL ARHYEEGGGL
PTSPAKAFAC YREAAEKKHV PAFAEVARRY LQGDGIAADP DQARDWACRA FAAGEQEAAL
PLLIELMNTA PERTAPAVQQ MFEQEQVAGA AGFDDTRIGG PSMAQLQMQL ARFFDQAGDY
AQAAKFYEKS GSRDPAVIKR RGELTTVRPC ETCGGVGKVR QSPPCPTCEG KGTVLCPLCD
GRGYNFAPGS PPCSTCGGSG QVRQDGHVFA CSTCGGTGKA KSSVIKQPCP NCAQGRAACR
ECGGTGRRTV LKECPDCHGT GARALADQ
|
|---|
| |