| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_2459 |
|---|
| Symbol | |
|---|
| ID | 6208399 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 3161603 |
|---|
| End bp | 3163045 |
|---|
| Gene Length | 1443 bp |
|---|
| Protein Length | 480 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 641692118 |
|---|
| Product | NADH dehydrogenase (quinone) |
|---|
| Protein accession | YP_001819341 |
|---|
| Protein GI | 182414275 |
|---|
| COG category | [C] Energy production and conversion
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0651] Formate hydrogenlyase subunit 3/Multisubunit Na+/H+ antiporter, MnhD subunit |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.38611 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCGTGAAA TCGGGCTCAT CGTCGTGCCG CTGGTGGCGG CGGTGATCGC GTTCGCCTGG
CGCAGCGAGC GGGGACGGCC ATGGCTGCTG CCGATCGGGG GCGCGGTGCA CACGCTGCTC
TCCTTCTGGC TCCTGGTGCG GCCGCCGACG GTCGCGGCCG GCGCGTGGTT CGGTTTCGAT
CCCGTCGCGC GTGCGGTGCT GCCGGCGGTA TCGTTGTTGT TCCTGGTGTG CTCCGCGTAC
GGCGTCGCTT ACCTGCGGCT GCGGCCGGAG CGGAAGAACC GGGTTTTCGT CGCGGCGATG
CTGGCCGTGC TGGGCTTGCT CAGCGCCGGT CATCAGGCGC GACATCTGGG CGCGCTCTGG
ATTGCGACGG AGGCGGTCAC ACTCGCGGCG GTGCCGTTGC TGCACTTCAA CGGCACGGGC
CGTGCGTTCG AGGCCACTTG GAAATACCTG CTCGTGGGCG GCACGGGCAT CGCGCTCTCG
CTGCTCGGCT CGTTCTGCCT CGGCTACGCA TCGCTGCATG GCGGGGGTGA AGGGGACCTT
ACCTTCGCGG CATTGATCGC GCAGGGACCA GGATTGTCGC GCGCGTGGGT GATCGCGGCG
TGGGTGCTGC TGCTCGCCGG CTACGGCACG AAGATGGGGC TCGCGCCGAT GCACACCTGG
AAACCGGACG CGTATGGCGA GGCGCCGGCG ATTGTCGGAG CGATGCTCGC GGGTGGCGTG
ACGACAGTGG CGTTCACCGC GGTGTTGCGC GTGCGCGCTG TGATGGACGC GGCGGGGGTG
GGTTTGGTCG CGGACCGGAC GCTGCTGGCG ATCGGACTGT TTTCGATGAT TATTGCGGCG
CTGTTCCTGC TGGGCACACG CGATTTCAAA CGGATGCTGG CTTACTCCAG CGTCGAGCAC
ATGGGGATTC TGAGCGTTGG CGCGGCGCTC GGCGGCGCGG GCGTGGCGGC GGCGCTGTTT
CATGTGTGGA GCAACAGCCT CACCAAAGGC GCGCTGTTTC TCAGCGCCGG CAACATCCGC
CGGGCGGCGG GCGGCCGGAC GCAGGATGAC GTTGCCGGGA TGGCGCTGCT CACGCCGGTG
TCGGCGCGAA TTTTCGTGAT CGCGTTGCTC GCGATCACGG CGTGTCCGCC GTTCGGACCT
TTTTTCAGCG AACTCCGGAT CGTGCGCACG GCGTTCGCGA CGGGGCACAC GACGGGCGCG
GCCATGTTTC TGGGCGGGTT GCTCTTCGCA TTCCTGGGGC TGACGCGGCT GGTATTTGCG
ATCGTCGATG GGCGGCCGAA AACCGCTACG CAGCCCATGA CGCAGCGGTT TCGTGAAACG
GCGAGTGTGA TCGTGCCGCC GCTCATCCTG TTGGCGCTGT CGCTATGGGT GGGTGTGGCG
ACGCCGCAGG TGTTGCGCGA GGCGTGGACC ACCGCGGCGC AAGCGATCTT CCCCACGCCA
TGA
|
|---|
| Protein sequence | MREIGLIVVP LVAAVIAFAW RSERGRPWLL PIGGAVHTLL SFWLLVRPPT VAAGAWFGFD
PVARAVLPAV SLLFLVCSAY GVAYLRLRPE RKNRVFVAAM LAVLGLLSAG HQARHLGALW
IATEAVTLAA VPLLHFNGTG RAFEATWKYL LVGGTGIALS LLGSFCLGYA SLHGGGEGDL
TFAALIAQGP GLSRAWVIAA WVLLLAGYGT KMGLAPMHTW KPDAYGEAPA IVGAMLAGGV
TTVAFTAVLR VRAVMDAAGV GLVADRTLLA IGLFSMIIAA LFLLGTRDFK RMLAYSSVEH
MGILSVGAAL GGAGVAAALF HVWSNSLTKG ALFLSAGNIR RAAGGRTQDD VAGMALLTPV
SARIFVIALL AITACPPFGP FFSELRIVRT AFATGHTTGA AMFLGGLLFA FLGLTRLVFA
IVDGRPKTAT QPMTQRFRET ASVIVPPLIL LALSLWVGVA TPQVLREAWT TAAQAIFPTP
|
|---|
| |