| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_1088 |
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| Symbol | |
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| ID | 6205364 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Opitutus terrae PB90-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010571 |
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| Strand | - |
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| Start bp | 1346278 |
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| End bp | 1349355 |
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| Gene Length | 3078 bp |
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| Protein Length | 1025 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 641690731 |
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| Product | HsdR family type I site-specific deoxyribonuclease |
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| Protein accession | YP_001817976 |
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| Protein GI | 182412910 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0610] Type I site-specific restriction-modification system, R (restriction) subunit and related helicases |
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| TIGRFAM ID | [TIGR00348] type I site-specific deoxyribonuclease, HsdR family |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.0870888 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCTCCG AGATGAATTA CGAACAGAAC CTCGATACGC CGCCTTCTGG CGTCTGCGAA
CAGGACATCG AGGACCAGTT CATCGCGAAG CTGTGTGACC TGAAGTACAC CTATCGCTCG
GACATTCGCG ATCGGGCCTC CCTCGAACGC AACTTTCGCC AGAAATTCGA GACGCTCAAT
CGCGTCCGCC TCACTGATGC CGAGTTCCAG CGCCTGCTCG ACGACCTCGT TTCCGCCGAC
GTCTTCAAAA ACGCGGTCCG ACTGCGCGAA AAGAACGACT TCGAGCGCGA CGATGGCACG
CCGCTTTCTT ACACCTTGGT GAACATCCGC GACTGGTGCA AAAACGACTT CGAGGTCGTC
CACCAGCTCC GCATCAACAC CGACTACAGT CATCACCGCT ACGACGTCCT CCTGCTCATC
AACGGTGTCC CGGTCGTTCA GGTGGAGCTG AAGACCCTTG GCGTCAGCCC GCGCCGGGCC
ATGCAGCAGA TCGCCGACTA CAAGGCCGAC GCGGGCAATG GCTACACCCG CACCCTCCTC
TGCTTCGTCC AGCTCTTCAT CGTCAGCAAC CGCGACTCGA CCTTCTACTT CGCCAACAAC
AACGCCCGCC ATTTCGCTTT CGATGCCGAG GAGCAGTTCC TCCCCGTCTA CAAATGGGCC
AATCGCGAAA ACAAGCCCAT CGTTGGTCTC GCTGAGTTTG CGGATGCCTT CCTGCCCAAG
TGCGACCTCG GCCGCATGAT CAGCCGCTAC ATGGTGCTCA TTCAGAGCGA GCAAAAGCTC
CTCATGATGC GCCCGTATCA GATCTACGCC GTCCAAAGCA TCGTCGACTG CATCGACCAG
AACAACGGCA ACGGCTACAT CTGGCACACC ACCGGCAGCG GCAAGACGCT CACCTCCTTC
AAGGCTTCCA CGCTCCTCCG CGACAATCCC GCCATCGACA AGTGCCTCTT CGTCGTCGAC
CGCAAGGACC TCGACCGCCA GACGCGCGAG GAGTTCAATC GCTTCCAGGA AGGCTGCGTC
GAGGCCAACA CCAATACCGC CACGCTCGTC GACCGCCTCC TCTCCGAGGA CAAGGCTGAC
AAGGTCATCG TCACCACCAT CCAGAAGCTC GGCCTCGCCC TCGACGAATC CAGCAAGCGC
AACCGACAGC GCGAAAAGCG TGGCCTCGAA ACCTATCGCG AGCGACTCGA GCCGCTGCGT
GACAAACGCG TCGTCCTCAT CTTCGACGAG TGCCACCGCT CCCAGTTCGG CGACAACCAC
GACGCGATCA AAGCCTTCTT CCCTCGCGCC CAACTCTTCG GTTTCACCGG CACACCCATT
TTCGACGACA ACGCCACTCG GATCAAAATC GACGGCAATC AGGCCTCCTA CCGGACGACC
GTCGAAACCT TCCAGCGCGA GCTGCACAGC TACACCATCA CCCACGCCAT CGAGGACAGG
AACGTCCTCA AATTCCACGT CGATTACTAC AAGCTGAAGG GCGAGGAAAC TCCGAAGCCC
GGCCGCGTCC TCGAGAAGCA GGCCGTCGTC CGCGCCATCC TCGACAATCA CGACGCCGTC
ACCCACGCCC GCCGCTTCAA TGCCCTCCTC GCCACCGCCT CGATCGACGA CGCGATCGAA
TACCACGGGC TGTTCCAAAA CCTCCAGGAC GAGAGAGTTA AAACCGATCC CGACTTTGTT
CCGCTCAAGA TCGCTGCTGT CTTCTCCCCG CCGGTTCCGC CGAGCGAGAA CGACAAAAAC
GCCAAGGACA TCGCGCAACT GCAGGAAGAC CTACCCACGG AGCAGGAGAA CAACCGGCAC
AATCCCGAAG AAAAACGGGC CGCCCTCGTC ACCATCATCG ACGCCTACAA CGCCCGCTAC
CGCGCCGCCC ACACCGTGTC CGAGTTCGAC CTTTACTATC AGGACGTCCA GCAGCGCATC
AAGGACCAGC GCTTCCCCAA TGCCGACCTT CCCCGCCGTG GGGCCGAGAA GATCGATGTC
ACCATCGTGG TCGACATGCT TCTCACGGGC TTCGACTCGA AATACCTTAA TACCCTCTAC
GTCGACAAGA CGCTGAAGCA CCACGGCCTC ATCCAGGCCT TCTCCCGGAC CAACCGCATC
ATCAACGCTA CCAAGCCCCA CGGCCACGTC CTCGACTTCC GCCAGCAGGA GTCCGCCGTG
AACGAGGCCA TCTTCCTGTT CTCCGGATTG AAGACGAAGG AGGCTGCTCG CGAAATCTGG
CTCGTCGAAT CCGCGCCCGA GGTTGTCAAG AGCTTCACCG CTGCCGTCGG CAAGCTTACC
GACTTCATGC GCTCCCAAGA GTTGCAGCCC GTCGCAGCGG ATGTCCCGAA GCTCTCCGGC
GACGAGGCGC GCGCCACCTT CATCGAGCGC TTCCGCGACG TCCAGCGGCT CAAGACCCAG
CTCGATCAAT ACACGGATCT CTCGCCCGAA CTGCGCACCG ATGTCGAACG CATCCTCCCC
AAGGACGATC TCACCGCCTT CCGCGGCGCC TACCTCGAAA CCGCCCGGGA CCTCAAGGCC
CGGCAGGGCC GCGAGGACGA CACCGTCAGT CCGATCGTCG AGGCGCTAGA CTTCGAGTTC
GTCCTCTTCG CCTCGGCCGA CATCGATTAC GATTACATCA TGGGACTCTG CGCCCGCTTC
ACGCAGCAGC AGCCCAAGGA ACCCCTGAAG CTCAACCGCG AGCAGCTCAT CGGCATCATC
GCCGCCGATG CCAAGTTCGT CGACGAGCGC GAGATCATCA CCGACTTCGT CCACACCCTG
GAGCCCGGCC AGCGACTCGA TGAAAAGGAA GTCGCCGTCG CCTACCGCCG CTTCCGGGAA
AACTTCCACG CTGCCGCGCT GGCGAAGGTC GCGGATAAAC ACCGCCTGCC CACCGAACGC
CTCCAAGCCT TCGTCGACAC CATTCTCCAA CGCCTCGTCT TCGACGGTGA GCAACTCACC
GAACTCCTCG CCCCGCTCGG GCTCAATTGG AAGGCCCGCC GTGTCGCCGA GCTCGCCTTG
ATGGAAGACC TCGTGCCCCT GCTCAAACAG CGCGCCGCCG GCCGCGACAT CTCCGGCCTC
AACGCCTACG AAACATGA
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| Protein sequence | MPSEMNYEQN LDTPPSGVCE QDIEDQFIAK LCDLKYTYRS DIRDRASLER NFRQKFETLN
RVRLTDAEFQ RLLDDLVSAD VFKNAVRLRE KNDFERDDGT PLSYTLVNIR DWCKNDFEVV
HQLRINTDYS HHRYDVLLLI NGVPVVQVEL KTLGVSPRRA MQQIADYKAD AGNGYTRTLL
CFVQLFIVSN RDSTFYFANN NARHFAFDAE EQFLPVYKWA NRENKPIVGL AEFADAFLPK
CDLGRMISRY MVLIQSEQKL LMMRPYQIYA VQSIVDCIDQ NNGNGYIWHT TGSGKTLTSF
KASTLLRDNP AIDKCLFVVD RKDLDRQTRE EFNRFQEGCV EANTNTATLV DRLLSEDKAD
KVIVTTIQKL GLALDESSKR NRQREKRGLE TYRERLEPLR DKRVVLIFDE CHRSQFGDNH
DAIKAFFPRA QLFGFTGTPI FDDNATRIKI DGNQASYRTT VETFQRELHS YTITHAIEDR
NVLKFHVDYY KLKGEETPKP GRVLEKQAVV RAILDNHDAV THARRFNALL ATASIDDAIE
YHGLFQNLQD ERVKTDPDFV PLKIAAVFSP PVPPSENDKN AKDIAQLQED LPTEQENNRH
NPEEKRAALV TIIDAYNARY RAAHTVSEFD LYYQDVQQRI KDQRFPNADL PRRGAEKIDV
TIVVDMLLTG FDSKYLNTLY VDKTLKHHGL IQAFSRTNRI INATKPHGHV LDFRQQESAV
NEAIFLFSGL KTKEAAREIW LVESAPEVVK SFTAAVGKLT DFMRSQELQP VAADVPKLSG
DEARATFIER FRDVQRLKTQ LDQYTDLSPE LRTDVERILP KDDLTAFRGA YLETARDLKA
RQGREDDTVS PIVEALDFEF VLFASADIDY DYIMGLCARF TQQQPKEPLK LNREQLIGII
AADAKFVDER EIITDFVHTL EPGQRLDEKE VAVAYRRFRE NFHAAALAKV ADKHRLPTER
LQAFVDTILQ RLVFDGEQLT ELLAPLGLNW KARRVAELAL MEDLVPLLKQ RAAGRDISGL
NAYET
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