| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0980 |
|---|
| Symbol | |
|---|
| ID | 6207317 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1204837 |
|---|
| End bp | 1206174 |
|---|
| Gene Length | 1338 bp |
|---|
| Protein Length | 445 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 641690603 |
|---|
| Product | SMP-30/gluconolaconase/LRE domain-containing protein |
|---|
| Protein accession | YP_001817868 |
|---|
| Protein GI | 182412802 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG3386] Gluconolactonase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.0105637 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCTTC AACCCCGCTT GTCCTTTCTC CCGCGACTGA CCGCGATGGC GCTTCTCGTC
ACGATGCTGG CAACCCTCGG CGCCCGCACG CGGGCGGAGT CTCAGGTTCC GTTCGTTGCG
CCCGACACGG TGCCCGGGCT GGTGATCGAC TGGTCGCTCT CACCGACGCT GCGGCCCTCC
GCGCTGGGGC CCGAGCGCTA TCTGGAGGGC AAGGCCGCAG CTGCGATCGA GTGGCTGCCG
GTCCGGAGCG ATGCTGCGGG ACTCGTGGAA CTCACGCGAT TCCGCACGCC CAACGCGCAG
GGTGGATCGA AGATCTGGGC TCGCGCGCTC GTCACCGCGG AGCGGAGGGA GGTCCGGCCG
TTTGCGCTGC GTTTTCGCGG CGACCTCGGC GTGTATCTGA ACGGCCAGAA ACTTTTCCAC
GGCCAGCGCG ACGGCGCGGC AAACGAGAAA CCCGACACGC TCTATTTGTC GCTCGAAGCG
GGAGACAACG AGCTGGTGCT GATGGCGACG GAGCAATCGG GCGGCTGGAG TTTCACGGTT
CGCGATCAGA GCGCGATCTT TCGCGCCCCG CAGCTCGCGC CGGTGTGGGA ACATCAGGGC
CGCTTGCCGG CGCCGGAGAG CGTCGCGCAC GATCCGAAGC GCGGCATGCT CTACGTCAGC
AACTTCGCCG GCAACTCGAT CGCGAAACTC GCGATGAACG GCGACGTGCT GGCGCGGGAT
TGGGTGAAAG ACGTCGACCG CCCCACGGGG CTGAAGCTGC ACGGCGGCCG GCTCTATGTG
GTCGCGCGCG GCGCGATCGT CGAAATCGAC CCGGAGACCG GGATGGTCGT CACGCGCACG
CCGATCGCAG GCGCCGTGTT TCCGAACGAT CTCGCGATCG ATGCCGATGG CGCGATCTAC
GTGACCGACA CGTTTAAGAA CTGCATTCAC CGCCTCGCGG CAGGCAGGTC CGAGGTGTGG
CTCGAGGGTC CGGCTGTGGC CCAGCCCAAC GGCATCCTGG TCGAGCGGGC GCGGCTCCTC
GTCGGGGTGA CTGCCGATGC CGCCATCAGG GCGGTCGACC TCGCGACCAA GGCGGTGACC
ACGCTCGTGA CGGTCAGCCG TCCGGCGAAC ATGGACGGGC TCACCAGCGA TGGCGCGGGC
GGCTACTTGT TCTCCGACTA CTTCGGCCGG CTCTACCACG TGGACGCAGC CGGTCGTCCG
ATGCTACTCC TCGACCGTCG CGGGCCACGG CAGTTCTGTG CGGACTTCGA GTATGTGCCG
AGCGAGCGAC TGATCATCAT ACCGTCGCTC TACGATGATC GCGTCACCGC GTATCACTGG
GGGCCGGCTT CAAACTAG
|
|---|
| Protein sequence | MLLQPRLSFL PRLTAMALLV TMLATLGART RAESQVPFVA PDTVPGLVID WSLSPTLRPS
ALGPERYLEG KAAAAIEWLP VRSDAAGLVE LTRFRTPNAQ GGSKIWARAL VTAERREVRP
FALRFRGDLG VYLNGQKLFH GQRDGAANEK PDTLYLSLEA GDNELVLMAT EQSGGWSFTV
RDQSAIFRAP QLAPVWEHQG RLPAPESVAH DPKRGMLYVS NFAGNSIAKL AMNGDVLARD
WVKDVDRPTG LKLHGGRLYV VARGAIVEID PETGMVVTRT PIAGAVFPND LAIDADGAIY
VTDTFKNCIH RLAAGRSEVW LEGPAVAQPN GILVERARLL VGVTADAAIR AVDLATKAVT
TLVTVSRPAN MDGLTSDGAG GYLFSDYFGR LYHVDAAGRP MLLLDRRGPR QFCADFEYVP
SERLIIIPSL YDDRVTAYHW GPASN
|
|---|
| |