| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Oter_0867 |
|---|
| Symbol | |
|---|
| ID | 6206629 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Opitutus terrae PB90-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010571 |
|---|
| Strand | + |
|---|
| Start bp | 1069923 |
|---|
| End bp | 1071599 |
|---|
| Gene Length | 1677 bp |
|---|
| Protein Length | 558 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 641690490 |
|---|
| Product | alpha amylase catalytic region |
|---|
| Protein accession | YP_001817755 |
|---|
| Protein GI | 182412689 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG0366] Glycosidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCCCCAC CCTTTTTCGC GCGGCGTCGA TTTCTGCTCT GTTTTCTCGC GTTGGTTGCC
CTGGCCGGTT CGTGGCTGCG GGCGGCGGCA CTCGCCGACG GTGGCTTGCC GCCGGATTGG
TGGCGCGATG CGGTGTTCTA CGAGATCTTC GTGCGCTCGT TTGCCGATGC CCGCAGCGGA
CCGCTCGCGA ACGATGGGAT CGGCGATTTC CAGGGCTTGA TCGACAAGCT CGACTACCTC
AACGACGGCC AGGGCGCCGC GGGAAAGTCG CTCGGCGTGA CAGCGCTCTG GCTGATGCCG
ATTCATCCTT CGCCGAGCTA TCACGGCTAT GACGTGAGCG ACTATTTCGC CGTGAATCCG
GAGTTCGGTG ACATGGAACT TTTCAAACGT TTCCTCGCGG AGGCGCATCG CCGCGGGATT
CGCGTGATCA TCGACTTCGT GCCGAACCAC GCATCGTCGC AGCATCCGCT TTTCCAACAG
GCGCTGAAAG AATCCGCCGA TGGCGACACG CGAAAGCTGT TTCGTTTCGC TGAGGTGCCG
CCCGAGCTGT TTGGTCCGTG GGATCAGCGC GCGTGGCATC CCGCGGGGTC GCCGGAGCGG
GGGTTTTACT ACGGCGTGTT TTCGTCGGAG ATGCCGGACT GGAATTTCAA CGATCCGCGC
GTGACCGAGC ACCACCGTCG CGCCGCGGAG TTCTGGCTGA AAGACGTGGG CGTCGACGGG
CTGCGGCTGG ATGCCGTGCG TTACCTGCTT GAGGTGGGCG AGCAGCTGCA GGACACGACG
GAGACGCGGG AATGGCTGCG GGAGTTCACC GAGTTTTGCC ACAGGGTGAA GCCGGGCTCC
TTCATCATCG GCGAGAACAC CGCGCGGATG ACCGAGGTGG CGCGGGCGAT CCGCGGCGGG
GCGCTCGACA GCGCGTTCGA GTTTGACCTC GCCCGGGCCA CGATCGAGTC GGTGCGGCTG
CACACGCCCG GAATCCTGAC GAAGGCGTTG GCGCGACTCG ACGCGTTGTA TGCGGGCGAC
AGCCCCTGGG CCACGCTGCT GACGAACCAC GACCAGGAGC GGGCGCGCAC GCAGCTCGAC
GGGAACGAGG CGTTGACGCG GCTCGCGACC AAGGTGCTTT TCACACTGCC GGGCGTGCCG
TTCCTCTACT ACGGCGAGGA GTTGGGGATG CAGGCCGCGA AACCGGATCC CGAGCTGCGC
ACGCCGATGC CGTGGACGGC GGAATCACCG AACGCGGGGT TTGCCGCCGC GGGCGTGCGC
GCATGGAAGG CGCCAAAGCC GGACTATCCC GAGGTCAACG TCGCGGCCCA GCGCGATGCA
TCCGACTCGT TGCTGAATCT CTATCGGCGG TTGATCCGGC TCAACGAGAG TTCGGTAGCG
CTGCGACATG GCCGCCCGGT ACCGATCGTG GCCGACAGCG CCCGGCTCTA TGTACAGATG
CGGGAGACCG CCGACGAGGC GGTGGTGATC GTGGGCAACT TCGGCGCGGA ACCCGTCGCC
GGTCCGAAGC TGACGGTGGA GCGCAGCGTA TTGCGAAGTG GGTGGCAGTT GAGCGAGGAG
CTGGAACGCA CGACGGTCGC CGCGCCCGAG ATCAACGCGA CCGGCGGATT CGAAGGTTGG
CGTCCGTTGC CGGAACTCGC GCCACAGTCA GTCTACGTGC TGCGCTGGCG CCGGTGA
|
|---|
| Protein sequence | MPPPFFARRR FLLCFLALVA LAGSWLRAAA LADGGLPPDW WRDAVFYEIF VRSFADARSG
PLANDGIGDF QGLIDKLDYL NDGQGAAGKS LGVTALWLMP IHPSPSYHGY DVSDYFAVNP
EFGDMELFKR FLAEAHRRGI RVIIDFVPNH ASSQHPLFQQ ALKESADGDT RKLFRFAEVP
PELFGPWDQR AWHPAGSPER GFYYGVFSSE MPDWNFNDPR VTEHHRRAAE FWLKDVGVDG
LRLDAVRYLL EVGEQLQDTT ETREWLREFT EFCHRVKPGS FIIGENTARM TEVARAIRGG
ALDSAFEFDL ARATIESVRL HTPGILTKAL ARLDALYAGD SPWATLLTNH DQERARTQLD
GNEALTRLAT KVLFTLPGVP FLYYGEELGM QAAKPDPELR TPMPWTAESP NAGFAAAGVR
AWKAPKPDYP EVNVAAQRDA SDSLLNLYRR LIRLNESSVA LRHGRPVPIV ADSARLYVQM
RETADEAVVI VGNFGAEPVA GPKLTVERSV LRSGWQLSEE LERTTVAAPE INATGGFEGW
RPLPELAPQS VYVLRWRR
|
|---|
| |